User contributions
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- 14:17, 20 October 2017 (diff | hist) . . (+552) . . Repeatmodeler
- 14:03, 20 October 2017 (diff | hist) . . (+353) . . Repeatmodeler
- 13:37, 20 October 2017 (diff | hist) . . (+3) . . Repeatmodeler
- 13:11, 20 October 2017 (diff | hist) . . (+597) . . Repeatmodeler
- 12:38, 20 October 2017 (diff | hist) . . (+1,964) . . Repeatmodeler
- 11:56, 20 October 2017 (diff | hist) . . (+294) . . Repeatmodeler
- 11:21, 20 October 2017 (diff | hist) . . (+57) . . Repeatmodeler
- 11:19, 20 October 2017 (diff | hist) . . (+540) . . Repeatmodeler
- 10:56, 20 October 2017 (diff | hist) . . (+122) . . Repeatmodeler
- 10:39, 20 October 2017 (diff | hist) . . (+193) . . N Repeatmodeler (Created page with "= Introdcuction = = Installation notes = nseg and nmerge (included in nseg) are quite old programs coded in C by NCBI. These were installed on all machines in /usr/local/bi...")
- 10:30, 20 October 2017 (diff | hist) . . (+21) . . Main Page
- 15:19, 17 October 2017 (diff | hist) . . (+242) . . Biotime machine
- 15:07, 17 October 2017 (diff | hist) . . (+426) . . Biotime machine
- 14:47, 17 October 2017 (diff | hist) . . (+469) . . Biotime machine
- 14:38, 17 October 2017 (diff | hist) . . (+145) . . Biotime machine
- 14:34, 17 October 2017 (diff | hist) . . (+203) . . Biotime machine
- 10:55, 17 October 2017 (diff | hist) . . (+106) . . MinION (Oxford Nanopore) (current)
- 11:45, 16 October 2017 (diff | hist) . . (+113) . . SCAN-pc laptop (current)
- 11:36, 16 October 2017 (diff | hist) . . (+168) . . SCAN-pc laptop
- 11:31, 16 October 2017 (diff | hist) . . (+430) . . SCAN-pc laptop
- 12:59, 11 October 2017 (diff | hist) . . (+87) . . Bisulfite Sequencing (current)
- 12:57, 11 October 2017 (diff | hist) . . (+166) . . N Bisulfite Sequencing (Created page with "= Introduction = Sequencing which causes unmethylated cytosine to be repaced by uracil. In this way, the methylation (which silences genes) pattern can be detected.")
- 12:54, 11 October 2017 (diff | hist) . . (-1) . . Main Page
- 12:54, 11 October 2017 (diff | hist) . . (+27) . . Main Page
- 23:10, 9 October 2017 (diff | hist) . . (-1) . . ChIP-Seq Top2 in Yeast
- 22:51, 9 October 2017 (diff | hist) . . (+301) . . ChIP-Seq Top2 in Yeast
- 22:31, 9 October 2017 (diff | hist) . . (+133) . . ChIP-Seq Top2 in Yeast
- 22:26, 9 October 2017 (diff | hist) . . (+264) . . ChIP-Seq Top2 in Yeast
- 17:39, 9 October 2017 (diff | hist) . . (+286) . . ChIP-Seq Top2 in Yeast
- 17:34, 9 October 2017 (diff | hist) . . (+414) . . ChIP-Seq Top2 in Yeast
- 17:19, 9 October 2017 (diff | hist) . . (0) . . ChIP-Seq Top2 in Yeast
- 17:13, 9 October 2017 (diff | hist) . . (+332) . . ChIP-Seq Top2 in Yeast
- 16:49, 9 October 2017 (diff | hist) . . (+157) . . GenomeTools (current)
- 13:31, 9 October 2017 (diff | hist) . . (+552) . . GenomeTools
- 11:05, 9 October 2017 (diff | hist) . . (+143) . . GenomeTools
- 11:47, 6 October 2017 (diff | hist) . . (+1) . . Banjo (current)
- 10:27, 6 October 2017 (diff | hist) . . (+84) . . CallSNPs.py (current)
- 10:09, 6 October 2017 (diff | hist) . . (+172) . . CallSNPs.py
- 10:07, 6 October 2017 (diff | hist) . . (+250) . . Banjo
- 09:10, 6 October 2017 (diff | hist) . . (+149) . . MicroRNAs
- 17:36, 5 October 2017 (diff | hist) . . (+64) . . ViennaRNA (current)
- 17:35, 5 October 2017 (diff | hist) . . (+65) . . Squid (current)
- 17:26, 5 October 2017 (diff | hist) . . (+223) . . Squid
- 17:24, 5 October 2017 (diff | hist) . . (+1) . . BLAST
- 17:23, 5 October 2017 (diff | hist) . . (+1,031) . . BLAST
- 14:30, 5 October 2017 (diff | hist) . . (+348) . . N Squid (Created page with "= Introduction = In the wide world of software, squid is a proxy server used in high traffic websites, but this squid is Sean Eddy's utilites for general sequence reading. I...")
- 14:28, 5 October 2017 (diff | hist) . . (+13) . . Main Page
- 13:36, 5 October 2017 (diff | hist) . . (-1) . . Perl (current)
- 13:35, 5 October 2017 (diff | hist) . . (+461) . . Perl
- 13:09, 5 October 2017 (diff | hist) . . (+25) . . Perl
- 13:08, 5 October 2017 (diff | hist) . . (+398) . . Perl
- 12:19, 5 October 2017 (diff | hist) . . (+369) . . ViennaRNA
- 12:17, 5 October 2017 (diff | hist) . . (0) . . Perl
- 12:16, 5 October 2017 (diff | hist) . . (+94) . . Perl
- 12:08, 5 October 2017 (diff | hist) . . (+417) . . N Perl (Created page with "= Introduction = Quite a large software package for dealing with RNA and RNA structure = Installation = New versions of perl follow this configuraion before compiling sh...")
- 12:03, 5 October 2017 (diff | hist) . . (+210) . . N ViennaRNA (Created page with "= Introduction = Quite a large software package for dealing with RNA and RNA structure = Installation = ViennaRNA has a perl interface as well as a python interface for bot...")
- 11:53, 5 October 2017 (diff | hist) . . (+32) . . Main Page
- 14:26, 4 October 2017 (diff | hist) . . (+314) . . MicroRNAs
- 14:14, 4 October 2017 (diff | hist) . . (+203) . . N MicroRNAs (Created page with "= Introduction = = Relevant Papers = == "Predicting effective microRNA target sites in mammalian mRNAs" == By Agarwal et al eLife 2015 , link [https://www.ncbi.nlm.nih.gov/p...")
- 14:09, 4 October 2017 (diff | hist) . . (+16) . . Main Page
- 17:30, 3 October 2017 (diff | hist) . . (+79) . . Banjo
- 17:23, 3 October 2017 (diff | hist) . . (+588) . . N Banjo (Created page with "= Introduction = Banjo is Bayesian Network software with a very range of applicability in terms of data sets. It is coded in java and can be activiated on the cluster with...")
- 17:18, 3 October 2017 (diff | hist) . . (+13) . . Main Page
- 10:11, 2 October 2017 (diff | hist) . . (+2,473) . . N ChIP-Seq Top2 in Yeast 12.09.2017 (Created page with "= Introduction = September 2017 sequencing of a series of datasets listed below = Raw dataset listing = * 2017_09_12_24_INP-56915985 2017-09-12-24-INP_S24_L001_R1_001.fast...")
- 10:08, 2 October 2017 (diff | hist) . . (+40) . . Main Page
- 09:52, 29 September 2017 (diff | hist) . . (-4) . . IGSR/1000 Genomes (current)
- 09:51, 29 September 2017 (diff | hist) . . (+336) . . IGSR/1000 Genomes
- 09:48, 29 September 2017 (diff | hist) . . (+122) . . N IGSR/1000 Genomes (Created page with "= Introduction = IGSR, the Internation Genome Sample Resource provides ongoing support for the 1000 Genomes Project data.")
- 09:46, 29 September 2017 (diff | hist) . . (+24) . . Main Page
- 13:52, 21 September 2017 (diff | hist) . . (+215) . . Roary (current)
- 18:00, 20 September 2017 (diff | hist) . . (-2) . . SCAN-pc laptop
- 17:59, 20 September 2017 (diff | hist) . . (+46) . . SCAN-pc laptop
- 17:59, 20 September 2017 (diff | hist) . . (+184) . . SCAN-pc laptop
- 17:57, 20 September 2017 (diff | hist) . . (+300) . . Incorrect rebooting of marvin 19.09.2017 (current)
- 14:38, 20 September 2017 (diff | hist) . . (+288) . . Incorrect rebooting of marvin 19.09.2017
- 14:35, 20 September 2017 (diff | hist) . . (+1,418) . . N Incorrect rebooting of marvin 19.09.2017 (Created page with "= Introduction = Following a much delayed maintenance period for marvin, the latest published update from RedHat on the 10 Sept 2017 (i.e. kernel 2.6.32-696.10.2.el6.x86_64)...")
- 13:49, 20 September 2017 (diff | hist) . . (+47) . . Main Page
- 16:12, 19 September 2017 (diff | hist) . . (+1,006) . . N SCAN-pc laptop (Created page with "= Introduction = Bought by Janet Cox-Singh for use exclusively with Oxford Nanopore's MinION USB sequencing devices = Recent Behaviour (Sept 2017) = The laptop will light...")
- 14:45, 19 September 2017 (diff | hist) . . (+21) . . Main Page
- 15:45, 15 September 2017 (diff | hist) . . (+48) . . Unicycler (current)
- 15:15, 15 September 2017 (diff | hist) . . (+253) . . Unicycler
- 15:10, 15 September 2017 (diff | hist) . . (+334) . . N Unicycler (Created page with "= Introduction = Assembles microbial genomes, like other tools, but with the differences that it handle different types of short and long reads so that it can make hybrid ass...")
- 13:24, 15 September 2017 (diff | hist) . . (+17) . . Main Page
- 16:40, 14 September 2017 (diff | hist) . . (+175) . . General Command-line Tips (current)
- 10:52, 8 September 2017 (diff | hist) . . (+1) . . ChIP-Seq Top2 in Yeast
- 10:51, 8 September 2017 (diff | hist) . . (+336) . . ChIP-Seq Top2 in Yeast
- 18:05, 21 August 2017 (diff | hist) . . (+280) . . RedHat
- 17:55, 21 August 2017 (diff | hist) . . (+133) . . RedHat
- 17:53, 21 August 2017 (diff | hist) . . (+612) . . RedHat
- 23:43, 8 August 2017 (diff | hist) . . (+10) . . ChIP-Seq Top2 in Yeast
- 23:41, 8 August 2017 (diff | hist) . . (0) . . ChIP-Seq Top2 in Yeast
- 23:29, 8 August 2017 (diff | hist) . . (+1,164) . . ChIP-Seq Top2 in Yeast
- 11:34, 8 August 2017 (diff | hist) . . (-12) . . ChIP-Seq Top2 in Yeast
- 11:31, 8 August 2017 (diff | hist) . . (+1,449) . . ChIP-Seq Top2 in Yeast
- 11:20, 8 August 2017 (diff | hist) . . (0) . . ChIP-Seq Top2 in Yeast
- 23:54, 7 August 2017 (diff | hist) . . (+226) . . Macs2 (current)
- 15:40, 7 August 2017 (diff | hist) . . (+1,074) . . ChIP-Seq Top2 in Yeast
- 17:16, 4 August 2017 (diff | hist) . . (+385) . . Meryl (current)
- 17:07, 4 August 2017 (diff | hist) . . (+6,254) . . N Meryl (Created page with "= Introduction = This is a kmer coounting program, part of a larger suite of tools at kmer.sourceforge.net It's by Brian Walenz of Kanu (MinION genome assembly fame). = Hel...")
- 16:59, 4 August 2017 (diff | hist) . . (+13) . . Main Page
- 08:08, 4 August 2017 (diff | hist) . . (+34) . . JBrowse (current)
- 18:37, 30 July 2017 (diff | hist) . . (+462) . . ChIP-Seq Top2 in Yeast
- 18:35, 30 July 2017 (diff | hist) . . (+2) . . ChIP-Seq Top2 in Yeast
- 18:34, 30 July 2017 (diff | hist) . . (+134) . . ChIP-Seq Top2 in Yeast
- 18:23, 30 July 2017 (diff | hist) . . (+274) . . ChIP-Seq Top2 in Yeast
- 18:20, 30 July 2017 (diff | hist) . . (-40) . . Main Page
- 18:19, 30 July 2017 (diff | hist) . . (+425) . . N ChIP-Seq Top2 in Yeast (Created page with "= Introduction = This wiki page combines the two sequencing experiments of ChIP-Seq on yeast samples udring June / July 2017. * ChIP-Seq Top2 peak-calling * ChIP-Seq T...")
- 07:50, 21 July 2017 (diff | hist) . . (+466) . . ChIP-Seq Top2 peak-calling E2
- 21:27, 20 July 2017 (diff | hist) . . (-53) . . ChIP-Seq Top2 peak-calling E2
- 21:23, 20 July 2017 (diff | hist) . . (+1,245) . . ChIP-Seq Top2 peak-calling E2
- 13:35, 20 July 2017 (diff | hist) . . (+269) . . JBrowse
- 10:27, 20 July 2017 (diff | hist) . . (+1,318) . . SWATH-MS Data Analysis (current)
- 14:30, 18 July 2017 (diff | hist) . . (+127) . . FASTQC and MultiQC (current)
- 13:44, 18 July 2017 (diff | hist) . . (+365) . . FASTQC and MultiQC
- 17:37, 17 July 2017 (diff | hist) . . (+35) . . ChIP-Seq Top2 peak-calling E2
- 17:32, 17 July 2017 (diff | hist) . . (0) . . ChIP-Seq Top2 peak-calling E2
- 17:29, 17 July 2017 (diff | hist) . . (+36) . . Main Page
- 17:26, 17 July 2017 (diff | hist) . . (-978) . . m ChIP-Seq Top2 peak-calling E2
- 17:08, 17 July 2017 (diff | hist) . . (+1,446) . . ChIP-Seq Top2 peak-calling E2
- 16:57, 17 July 2017 (diff | hist) . . (+4,892) . . N ChIP-Seq Top2 peak-calling E2 (Created page with "= Introduction = ChIP-Seq on Mutant vs. Wildtype, two states, 4 sets of pairs each, for a total of 16 pairs of paired-end datasets. The generic pipeline One of the authors...")
- 16:45, 17 July 2017 (diff | hist) . . (+13) . . ChIP-Seq Top2 peak-calling
- 14:58, 12 July 2017 (diff | hist) . . (+303) . . ChIP-Seq Top2 peak-calling
- 14:52, 12 July 2017 (diff | hist) . . (+289) . . ChIP-Seq Top2 peak-calling
- 14:46, 12 July 2017 (diff | hist) . . (0) . . N File:Uls1 teld0.png (current)
- 14:45, 12 July 2017 (diff | hist) . . (0) . . N File:Wt teld0.png (current)
- 10:55, 12 July 2017 (diff | hist) . . (0) . . Macs2
- 13:11, 7 July 2017 (diff | hist) . . (+2) . . CallSNPs.py
- 14:27, 6 July 2017 (diff | hist) . . (+414) . . JBrowse
- 13:50, 6 July 2017 (diff | hist) . . (+247) . . JBrowse
- 10:13, 6 July 2017 (diff | hist) . . (+42) . . N SWATH-MS Data Analysis (Created page with "= Introduction = = Links = * Pyprophet")
- 10:11, 6 July 2017 (diff | hist) . . (+47) . . Main Page
- 16:26, 4 July 2017 (diff | hist) . . (+13) . . RedHat
- 16:03, 4 July 2017 (diff | hist) . . (+287) . . RedHat
- 15:23, 4 July 2017 (diff | hist) . . (+581) . . SNP Analysis and phylogenetics (current)
- 14:47, 4 July 2017 (diff | hist) . . (+235) . . SNP Analysis and phylogenetics
- 14:35, 4 July 2017 (diff | hist) . . (+66) . . SNP Analysis and phylogenetics
- 14:19, 4 July 2017 (diff | hist) . . (+338) . . SNP Analysis and phylogenetics
- 14:10, 4 July 2017 (diff | hist) . . (+109) . . N SNP Analysis and phylogenetics (Created page with " = Links = == Andrew Rambaut = [https://groups.google.com/forum/#!topic/beast-users/V5vRghILMfw Says] that")
- 14:09, 4 July 2017 (diff | hist) . . (+37) . . Main Page
- 13:27, 29 June 2017 (diff | hist) . . (+253) . . Macs2
- 22:47, 28 June 2017 (diff | hist) . . (+1,904) . . Thor (current)
- 17:21, 21 June 2017 (diff | hist) . . (+1) . . Aspera (current)
- 17:21, 21 June 2017 (diff | hist) . . (+157) . . Aspera
- 17:13, 21 June 2017 (diff | hist) . . (+75) . . Aspera
- 15:13, 21 June 2017 (diff | hist) . . (+393) . . N Aspera (Created page with "= Introduction = It's probably the fastest way of downloading SRA files from the Short Read Archive. It's considerbaly faster than using ''''fastq-dump''' in its download mod...")
- 14:07, 21 June 2017 (diff | hist) . . (+14) . . Main Page
- 12:25, 21 June 2017 (diff | hist) . . (+92) . . JBrowse
- 17:48, 20 June 2017 (diff | hist) . . (+129) . . JBrowse
- 00:13, 19 June 2017 (diff | hist) . . (+1) . . Research Data Management (current)
- 23:05, 18 June 2017 (diff | hist) . . (+153) . . Research Data Management
- 15:36, 18 June 2017 (diff | hist) . . (+559) . . Research Data Management
- 15:08, 18 June 2017 (diff | hist) . . (+492) . . N Research Data Management (Created page with "= Introduction = The generation of genomic data has been expanding at ever-increasing rates whcih can result in a chaotic flood of datasets unless some discipline of Data Ama...")
- 15:04, 18 June 2017 (diff | hist) . . (+31) . . Main Page
- 16:14, 16 June 2017 (diff | hist) . . (+2,551) . . Thor
- 11:10, 16 June 2017 (diff | hist) . . (+67) . . JBrowse
- 10:53, 16 June 2017 (diff | hist) . . (+110) . . JBrowse
- 10:51, 16 June 2017 (diff | hist) . . (+187) . . JBrowse
- 10:26, 16 June 2017 (diff | hist) . . (+319) . . JBrowse
- 18:08, 15 June 2017 (diff | hist) . . (+534) . . N Bgenie (Created page with "= Introduction = bgen file processor from Jonathan Marchini = Usage = to load up the software: module load bgenie == typical use cases == (See the homepage n the Links...") (current)
- 17:51, 15 June 2017 (diff | hist) . . (+14) . . Main Page
- 15:06, 15 June 2017 (diff | hist) . . (+20) . . Main Page
- 15:05, 15 June 2017 (diff | hist) . . (+4,004) . . N KentUtils (Created page with "= Introduction = A myriad of bioinformatics tools from Jim Kent = The tools = addCols bedGraphToBigWig bigWigCorrelate chainStitchId faCmp...") (current)
- 14:45, 15 June 2017 (diff | hist) . . (0) . . Samtools (current)
- 14:45, 15 June 2017 (diff | hist) . . (+92) . . Samtools
- 13:22, 14 June 2017 (diff | hist) . . (+104) . . Deeptools (current)
- 13:20, 14 June 2017 (diff | hist) . . (+2,865) . . N Deeptools (Created page with "= Introduction = Deeptools is a python processing suite for bamfiles and renders them into genome browser track forms as such as bed and bigwig. It can be invoked in three w...")
- 13:12, 14 June 2017 (diff | hist) . . (+17) . . Main Page
- 16:32, 12 June 2017 (diff | hist) . . (+233) . . Bamtools (current)
- 14:27, 12 June 2017 (diff | hist) . . (-203) . . Bamtools
- 13:07, 12 June 2017 (diff | hist) . . (+8,922) . . N Bamtools (Created page with "= Introduction = The associated tool list is as follows: * convert * count * coverage * filter * header * index * merge * random * revert * sort * split * stats Introductio...")
- 12:59, 12 June 2017 (diff | hist) . . (+16) . . Main Page
- 11:01, 6 June 2017 (diff | hist) . . (+59) . . Thor
- 10:59, 6 June 2017 (diff | hist) . . (+1,660) . . Thor
- 10:21, 6 June 2017 (diff | hist) . . (+94) . . Thor
- 10:18, 6 June 2017 (diff | hist) . . (+2,081) . . Thor
- 17:15, 5 June 2017 (diff | hist) . . (-2,420) . . Macs2
- 17:12, 5 June 2017 (diff | hist) . . (+3,157) . . Macs2
- 17:05, 5 June 2017 (diff | hist) . . (+124) . . Macs2
- 16:54, 5 June 2017 (diff | hist) . . (0) . . Main Page
- 16:53, 5 June 2017 (diff | hist) . . (+43) . . Blat (current)
- 16:52, 5 June 2017 (diff | hist) . . (+768) . . N Blat (Created page with "= Introduction = BLAT is a tool from Jim Kent's stable at UCSD. In purpose it is very close to NCBI's BLAST, but it generally is easier in terms of switches and input options...")
- 16:42, 5 June 2017 (diff | hist) . . (+12) . . Main Page
- 16:23, 5 June 2017 (diff | hist) . . (+306) . . Thor
- 16:19, 5 June 2017 (diff | hist) . . (+462) . . Thor
- 14:33, 5 June 2017 (diff | hist) . . (+2,009) . . N Thor (Created page with "= Introduction = This is one of the newer Differential Peak callers from Costalab in Aachen. = Usage = == a first run == The first few runs are usually error-prone. Thor i...")
- 14:16, 5 June 2017 (diff | hist) . . (+12) . . Main Page
- 13:54, 5 June 2017 (diff | hist) . . (+50) . . m Macs2
- 11:53, 5 June 2017 (diff | hist) . . (+6,446) . . Macs2
- 09:49, 1 June 2017 (diff | hist) . . (0) . . ChIP-Seq Top2 peak-calling
- 16:41, 31 May 2017 (diff | hist) . . (+429) . . ChIP-Seq Top2 peak-calling
- 16:12, 30 May 2017 (diff | hist) . . (+173) . . Bwa (current)
- 15:29, 30 May 2017 (diff | hist) . . (-5) . . ChIP-Seq Top2 peak-calling
- 15:14, 30 May 2017 (diff | hist) . . (+2,521) . . ChIP-Seq Top2 peak-calling
- 14:55, 30 May 2017 (diff | hist) . . (0) . . ChIP-Seq Top2 peak-calling
- 14:54, 30 May 2017 (diff | hist) . . (+1,148) . . ChIP-Seq Top2 peak-calling
- 14:50, 30 May 2017 (diff | hist) . . (+194) . . N ChIP-Seq Top2 peak-calling (Created page with "= Introduction = = Raw data description = = Raw dataset quality analysis = Using FASTQC and them MultiQC. Results linked [http:stab.st-andrews.ac.uk/stab/top2/fastqc.html...")
- 14:29, 30 May 2017 (diff | hist) . . (+33) . . Main Page (→Pipelines)
- 17:49, 22 May 2017 (diff | hist) . . (+3,216) . . N Macs2 (Created page with "= Introduction = One of the main programs used for peak-calling on ChIP-Seq alignments. = Usage = == Help file == Here is the programs help file obtained with the command...")
- 17:45, 22 May 2017 (diff | hist) . . (+13) . . Main Page
- 15:09, 14 May 2017 (diff | hist) . . (+13) . . Quality of Mapping Exercise (current)
- 15:05, 14 May 2017 (diff | hist) . . (+203) . . Quality Control and Preprocessing Exercise (current)
- 15:02, 14 May 2017 (diff | hist) . . (+148) . . Mapping to Reference Exercise (current)
- 14:49, 14 May 2017 (diff | hist) . . (+46) . . Quality of Mapping Exercise
- 14:46, 14 May 2017 (diff | hist) . . (+24) . . Quality of Mapping Exercise
- 23:34, 11 May 2017 (diff | hist) . . (-9) . . Functional Analysis Talk (current)
- 23:32, 11 May 2017 (diff | hist) . . (-31) . . Functional Analysis Talk
- 23:28, 11 May 2017 (diff | hist) . . (+2,170) . . N Functional Analysis Talk (Created page with "= Why do functional analysis? = * Statistical significance is not the same as biological significance * Variety of methods available to compare functional annotation to gene...")
- 23:24, 11 May 2017 (diff | hist) . . (0) . . N File:Gseawind.png (Uploaded with SimpleBatchUpload) (current)
- 23:24, 11 May 2017 (diff | hist) . . (0) . . N File:Rankintro.png (Uploaded with SimpleBatchUpload) (current)
- 23:24, 11 May 2017 (diff | hist) . . (0) . . N File:Fourcol.png (Uploaded with SimpleBatchUpload) (current)
- 23:24, 11 May 2017 (diff | hist) . . (0) . . N File:Highen.png (Uploaded with SimpleBatchUpload) (current)
- 23:24, 11 May 2017 (diff | hist) . . (0) . . N File:Line2.png (Uploaded with SimpleBatchUpload) (current)
- 23:24, 11 May 2017 (diff | hist) . . (0) . . N File:Nulldist.png (Uploaded with SimpleBatchUpload) (current)
- 23:24, 11 May 2017 (diff | hist) . . (0) . . N File:Eachgs.png (Uploaded with SimpleBatchUpload) (current)
- 23:24, 11 May 2017 (diff | hist) . . (0) . . N File:Line1.png (Uploaded with SimpleBatchUpload) (current)
- 23:24, 11 May 2017 (diff | hist) . . (0) . . N File:Line3.png (Uploaded with SimpleBatchUpload) (current)
- 21:45, 11 May 2017 (diff | hist) . . (+841) . . Estimating Gene Count Exercise (current)
- 21:35, 11 May 2017 (diff | hist) . . (+404) . . Visualisation of mapped reads (current)
- 21:16, 11 May 2017 (diff | hist) . . (+868) . . Quality of Mapping Exercise
- 19:29, 11 May 2017 (diff | hist) . . (+293) . . I2rda Course Cheatsheet (current)
- 19:18, 11 May 2017 (diff | hist) . . (+158) . . Quality of Mapping Exercise
- 18:44, 11 May 2017 (diff | hist) . . (+13) . . Mapping to Reference Exercise
- 18:44, 11 May 2017 (diff | hist) . . (+108) . . Mapping to Reference Exercise
- 18:36, 11 May 2017 (diff | hist) . . (+1,528) . . Mapping to Reference Exercise
- 17:21, 11 May 2017 (diff | hist) . . (+167) . . Intro to RNA-Seq Data Analysis Course (current)
- 17:11, 11 May 2017 (diff | hist) . . (+129) . . Intro to RNA-Seq Data Analysis Course
- 17:00, 11 May 2017 (diff | hist) . . (+662) . . Intro to RNA-Seq Data Analysis Course
- 16:14, 11 May 2017 (diff | hist) . . (+355) . . Intro to RNA-Seq Data Analysis Course
- 15:10, 11 May 2017 (diff | hist) . . (-1) . . Intro to RNA-Seq Data Analysis Course
- 15:10, 11 May 2017 (diff | hist) . . (+50) . . Intro to RNA-Seq Data Analysis Course
- 15:04, 11 May 2017 (diff | hist) . . (0) . . N File:Marv.png (current)
- 14:33, 11 May 2017 (diff | hist) . . (+1,441) . . Intro to RNA-Seq Data Analysis Course
- 13:23, 11 May 2017 (diff | hist) . . (+16) . . I2rda Course Cheatsheet
- 13:20, 11 May 2017 (diff | hist) . . (+88) . . I2rda Course Cheatsheet
- 13:14, 11 May 2017 (diff | hist) . . (+479) . . Key Aspects of R Exercise (current)
- 10:08, 11 May 2017 (diff | hist) . . (+65) . . m Functional Analysis Exercise (current)
- 09:57, 11 May 2017 (diff | hist) . . (+34) . . Functional Analysis Exercise
- 09:49, 11 May 2017 (diff | hist) . . (+221) . . Functional Analysis Exercise
- 09:44, 11 May 2017 (diff | hist) . . (0) . . Functional Analysis Exercise
- 09:44, 11 May 2017 (diff | hist) . . (+39) . . Functional Analysis Exercise
- 09:39, 11 May 2017 (diff | hist) . . (-80) . . Functional Analysis Exercise
- 01:11, 11 May 2017 (diff | hist) . . (+2) . . Key Aspects of R Exercise
- 01:10, 11 May 2017 (diff | hist) . . (+48) . . Key Aspects of R Exercise
- 01:05, 11 May 2017 (diff | hist) . . (-4) . . Key Aspects of R Exercise
- 01:03, 11 May 2017 (diff | hist) . . (+226) . . Key Aspects of R Exercise
- 00:41, 11 May 2017 (diff | hist) . . (+6) . . Functional Analysis Exercise
- 15:02, 10 May 2017 (diff | hist) . . (-453) . . Key Aspects of R Exercise
- 14:27, 10 May 2017 (diff | hist) . . (+813) . . Differential Expression Exercise (current)
- 13:17, 10 May 2017 (diff | hist) . . (+67) . . Differential Expression Exercise
- 13:13, 10 May 2017 (diff | hist) . . (0) . . N File:Sf3.png (current)
- 12:33, 10 May 2017 (diff | hist) . . (+757) . . Quality Control and Preprocessing Talk (current)
- 12:13, 10 May 2017 (diff | hist) . . (0) . . N File:Fqhead.png (current)
- 11:26, 10 May 2017 (diff | hist) . . (+90) . . Intro to RNA-Seq Data Analysis Course
- 11:23, 10 May 2017 (diff | hist) . . (+669) . . Intro to RNA-Seq Data Analysis Course
- 11:02, 10 May 2017 (diff | hist) . . (+628) . . Key Aspects of R Exercise
- 00:15, 10 May 2017 (diff | hist) . . (+64) . . Differential Expression Exercise
- 00:02, 10 May 2017 (diff | hist) . . (+475) . . Differential Expression Exercise
- 00:01, 10 May 2017 (diff | hist) . . (-1,454) . . Key Aspects of R Exercise
- 23:52, 9 May 2017 (diff | hist) . . (+504) . . I2rda Course Cheatsheet
- 23:16, 9 May 2017 (diff | hist) . . (+786) . . Differential Expression Exercise
- 22:32, 9 May 2017 (diff | hist) . . (+217) . . Trinity Protocol (current)
- 22:29, 9 May 2017 (diff | hist) . . (-434) . . Trinity Protocol (n)
- 18:09, 9 May 2017 (diff | hist) . . (+23) . . m Differential Expression Talk (current)
- 18:05, 9 May 2017 (diff | hist) . . (-280) . . Differential Expression Talk
- 18:05, 9 May 2017 (diff | hist) . . (0) . . N File:Twoma.png (Uploaded with SimpleBatchUpload) (current)
- 18:03, 9 May 2017 (diff | hist) . . (0) . . N File:Pval.png (Uploaded with SimpleBatchUpload) (current)
- 18:03, 9 May 2017 (diff | hist) . . (0) . . N File:Pvalfdr.png (Uploaded with SimpleBatchUpload) (current)
- 17:36, 9 May 2017 (diff | hist) . . (-360) . . Differential Expression Talk
- 17:28, 9 May 2017 (diff | hist) . . (-553) . . Differential Expression Talk
- 17:27, 9 May 2017 (diff | hist) . . (0) . . N File:Groupcomp.png (Uploaded with SimpleBatchUpload) (current)
- 17:27, 9 May 2017 (diff | hist) . . (0) . . N File:Expdes.png (Uploaded with SimpleBatchUpload) (current)
- 17:27, 9 May 2017 (diff | hist) . . (0) . . N File:Matchcomp.png (Uploaded with SimpleBatchUpload) (current)
- 16:40, 9 May 2017 (diff | hist) . . (0) . . Differential Expression Talk
- 16:27, 9 May 2017 (diff | hist) . . (+434) . . Differential Expression Talk
- 16:09, 9 May 2017 (diff | hist) . . (+347) . . Differential Expression Talk
- 16:03, 9 May 2017 (diff | hist) . . (0) . . N File:Normcount1.png (Uploaded with SimpleBatchUpload) (current)
- 16:03, 9 May 2017 (diff | hist) . . (0) . . N File:Normcount2.png (Uploaded with SimpleBatchUpload) (current)
- 16:00, 9 May 2017 (diff | hist) . . (-1,099) . . Differential Expression Talk (n)
- 15:25, 9 May 2017 (diff | hist) . . (+1,302) . . N Maximum Likelihood (Created page with "= Introduction = This is a very widely used mathematical (probabilistic) approach used when trying to build a model from real-world observations. A key aspect of the approac...") (current)
- 15:11, 9 May 2017 (diff | hist) . . (+25) . . Main Page
- 15:00, 9 May 2017 (diff | hist) . . (0) . . N File:Dillies.png (Uploaded with SimpleBatchUpload) (current)
- 14:52, 9 May 2017 (diff | hist) . . (0) . . N File:Bcv1.png (Uploaded with SimpleBatchUpload) (current)
- 14:52, 9 May 2017 (diff | hist) . . (0) . . N File:Norm1.png (Uploaded with SimpleBatchUpload) (current)
- 14:52, 9 May 2017 (diff | hist) . . (0) . . N File:Twosmear.png (Uploaded with SimpleBatchUpload) (current)
- 14:52, 9 May 2017 (diff | hist) . . (0) . . N File:Twof.png (Uploaded with SimpleBatchUpload) (current)
- 14:52, 9 May 2017 (diff | hist) . . (0) . . N File:Norm2.png (Uploaded with SimpleBatchUpload) (current)
- 14:52, 9 May 2017 (diff | hist) . . (0) . . N File:Singg3.png (Uploaded with SimpleBatchUpload) (current)
- 14:52, 9 May 2017 (diff | hist) . . (0) . . N File:Outp.png (Uploaded with SimpleBatchUpload) (current)
- 14:52, 9 May 2017 (diff | hist) . . (0) . . N File:Test100.png (Uploaded with SimpleBatchUpload) (current)
- 14:52, 9 May 2017 (diff | hist) . . (0) . . N File:Singg2.png (Uploaded with SimpleBatchUpload) (current)
- 14:52, 9 May 2017 (diff | hist) . . (0) . . N File:Singg1.png (Uploaded with SimpleBatchUpload) (current)
- 14:52, 9 May 2017 (diff | hist) . . (0) . . N File:Mda5.png (Uploaded with SimpleBatchUpload) (current)
- 14:52, 9 May 2017 (diff | hist) . . (0) . . N File:Mda3.png (Uploaded with SimpleBatchUpload) (current)
- 14:52, 9 May 2017 (diff | hist) . . (0) . . N File:Mda4.png (Uploaded with SimpleBatchUpload) (current)
- 14:52, 9 May 2017 (diff | hist) . . (0) . . N File:Mda2.png (Uploaded with SimpleBatchUpload) (current)
- 14:52, 9 May 2017 (diff | hist) . . (0) . . N File:Mda1.png (Uploaded with SimpleBatchUpload) (current)
- 14:35, 9 May 2017 (diff | hist) . . (0) . . N File:Minpath.png (Uploaded with SimpleBatchUpload) (current)
- 14:35, 9 May 2017 (diff | hist) . . (0) . . N File:Isolik.png (Uploaded with SimpleBatchUpload) (current)
- 14:34, 9 May 2017 (diff | hist) . . (-409) . . Estimating Gene Count Talk (current)
- 14:21, 9 May 2017 (diff | hist) . . (-37) . . Estimating Gene Count Talk
- 14:18, 9 May 2017 (diff | hist) . . (0) . . File:Htseq.png (Rf uploaded a new version of File:Htseq.png) (current)
- 14:18, 9 May 2017 (diff | hist) . . (0) . . N File:Htcats.png (Uploaded with SimpleBatchUpload) (current)
- 14:14, 9 May 2017 (diff | hist) . . (-401) . . Estimating Gene Count Talk
- 14:13, 9 May 2017 (diff | hist) . . (0) . . N File:Htseq.png (Uploaded with SimpleBatchUpload)
- 14:13, 9 May 2017 (diff | hist) . . (0) . . N File:Htcats.png.png (Uploaded with SimpleBatchUpload) (current)
- 14:13, 9 May 2017 (diff | hist) . . (0) . . N File:T1t2t3aggreg.png (Uploaded with SimpleBatchUpload) (current)
- 14:13, 9 May 2017 (diff | hist) . . (0) . . N File:T1t2t3.png (Uploaded with SimpleBatchUpload) (current)
- 14:13, 9 May 2017 (diff | hist) . . (0) . . N File:Unsolved.png (Uploaded with SimpleBatchUpload) (current)
- 14:13, 9 May 2017 (diff | hist) . . (0) . . N File:T1t2aggreg.png (Uploaded with SimpleBatchUpload) (current)
- 14:13, 9 May 2017 (diff | hist) . . (0) . . N File:T1.png (Uploaded with SimpleBatchUpload) (current)
- 14:13, 9 May 2017 (diff | hist) . . (0) . . N File:T1t2.png (Uploaded with SimpleBatchUpload) (current)
- 13:33, 9 May 2017 (diff | hist) . . (+2,175) . . N Estimating Gene Count Talk (Created page with "Estimating gene count = Estimating Gene Count = How many reads are overlapping genomic features? - or - Can we confidently assign each read to a feature/transcript/gene? Not...")
- 13:22, 9 May 2017 (diff | hist) . . (-13) . . Quality of Mapping Talk (current)
- 13:20, 9 May 2017 (diff | hist) . . (-17) . . Quality of Mapping Talk
- 13:20, 9 May 2017 (diff | hist) . . (+17) . . Quality of Mapping Talk
- 13:15, 9 May 2017 (diff | hist) . . (+1,328) . . N Quality of Mapping Talk (Created page with "= Mapping quality control = Some issues are only detectable in the context of the genome: * Duplicate reads * Fragment size distribution * Gene coverage * Completeness of data...")
- 12:49, 9 May 2017 (diff | hist) . . (0) . . N File:Gcov.png (Uploaded with SimpleBatchUpload) (current)
- 12:49, 9 May 2017 (diff | hist) . . (0) . . N File:Inssz.png (Uploaded with SimpleBatchUpload) (current)
- 12:49, 9 May 2017 (diff | hist) . . (0) . . N File:Comp.png (Uploaded with SimpleBatchUpload) (current)
- 12:49, 9 May 2017 (diff | hist) . . (0) . . N File:Dups.png (Uploaded with SimpleBatchUpload) (current)
- 12:33, 9 May 2017 (diff | hist) . . (+58) . . Quality Control and Preprocessing Exercise
- 12:31, 9 May 2017 (diff | hist) . . (+129) . . Quality Control and Preprocessing Exercise
- 11:39, 9 May 2017 (diff | hist) . . (0) . . File:Biorpaper.png (Rf uploaded a new version of File:Biorpaper.png) (current)
- 11:39, 9 May 2017 (diff | hist) . . (0) . . File:Rnasoc.png (Rf uploaded a new version of File:Rnasoc.png) (current)
- 11:28, 9 May 2017 (diff | hist) . . (0) . . N File:Igvlayout.png (Uploaded with SimpleBatchUpload) (current)
- 11:28, 9 May 2017 (diff | hist) . . (0) . . N File:Rnasoc.png (Uploaded with SimpleBatchUpload)
- 11:28, 9 May 2017 (diff | hist) . . (0) . . N File:Biorpaper.png (Uploaded with SimpleBatchUpload)
- 11:27, 9 May 2017 (diff | hist) . . (+189) . . RNASeq library preparation (current)
- 11:11, 9 May 2017 (diff | hist) . . (+55) . . Visualisation of mapped reads
- 10:32, 9 May 2017 (diff | hist) . . (-3) . . RNASeq library preparation
- 10:24, 9 May 2017 (diff | hist) . . (0) . . N File:Dan.png (Uploaded with SimpleBatchUpload) (current)
- 10:24, 9 May 2017 (diff | hist) . . (0) . . N File:Illu.png (Uploaded with SimpleBatchUpload) (current)
- 10:24, 9 May 2017 (diff | hist) . . (0) . . N File:Illu2.png (Uploaded with SimpleBatchUpload) (current)
- 10:24, 9 May 2017 (diff | hist) . . (0) . . N File:Totalrna.png (Uploaded with SimpleBatchUpload) (current)
- 10:24, 9 May 2017 (diff | hist) . . (0) . . N File:Illu5.png (Uploaded with SimpleBatchUpload) (current)
- 10:24, 9 May 2017 (diff | hist) . . (0) . . N File:Rnawf.png (Uploaded with SimpleBatchUpload) (current)
- 10:24, 9 May 2017 (diff | hist) . . (0) . . N File:Illu4.png (Uploaded with SimpleBatchUpload) (current)
- 10:24, 9 May 2017 (diff | hist) . . (0) . . N File:Illu3.png (Uploaded with SimpleBatchUpload) (current)
- 10:23, 9 May 2017 (diff | hist) . . (+787) . . N RNASeq library preparation (Created page with "= Total RNA = File:totalrna.png = mRNA-seq workflow = File:rnawf.png = Illumina NGS Library = File:illu.png = Illumina library read binding 1= File:illu2....")
- 00:19, 9 May 2017 (diff | hist) . . (+13) . . Mapping to Reference Talk (current)
- 00:16, 9 May 2017 (diff | hist) . . (-507) . . Mapping to Reference Talk
- 00:13, 9 May 2017 (diff | hist) . . (0) . . N File:Optags2.png (Uploaded with SimpleBatchUpload) (current)
- 00:13, 9 May 2017 (diff | hist) . . (0) . . N File:Optags1.png (Uploaded with SimpleBatchUpload) (current)
- 00:12, 9 May 2017 (diff | hist) . . (0) . . N File:Alignsec.png (Uploaded with SimpleBatchUpload) (current)
- 00:12, 9 May 2017 (diff | hist) . . (0) . . N File:Sam2panel.png (Uploaded with SimpleBatchUpload) (current)
- 00:12, 9 May 2017 (diff | hist) . . (0) . . N File:Headersec.png (Uploaded with SimpleBatchUpload) (current)
- 00:12, 9 May 2017 (diff | hist) . . (0) . . N File:Cigarex.png (Uploaded with SimpleBatchUpload) (current)
- 00:12, 9 May 2017 (diff | hist) . . (0) . . N File:Flag.png (Uploaded with SimpleBatchUpload) (current)
- 00:12, 9 May 2017 (diff | hist) . . (0) . . N File:Cigar.png (Uploaded with SimpleBatchUpload) (current)
- 23:31, 8 May 2017 (diff | hist) . . (0) . . N File:Hist.png (Uploaded with SimpleBatchUpload) (current)
- 23:31, 8 May 2017 (diff | hist) . . (0) . . N File:Mappers.png (Uploaded with SimpleBatchUpload) (current)
- 23:31, 8 May 2017 (diff | hist) . . (0) . . N File:Vital.png (Uploaded with SimpleBatchUpload) (current)
- 23:31, 8 May 2017 (diff | hist) . . (0) . . N File:Mapproc.png (Uploaded with SimpleBatchUpload) (current)
- 23:30, 8 May 2017 (diff | hist) . . (-374) . . Mapping to Reference Talk
- 23:18, 8 May 2017 (diff | hist) . . (+6) . . Quality Control and Preprocessing Talk
- 23:16, 8 May 2017 (diff | hist) . . (0) . . N File:Sdl3.png (Uploaded with SimpleBatchUpload) (current)
- 23:16, 8 May 2017 (diff | hist) . . (0) . . File:Sf1.png (Rf uploaded a new version of File:Sf1.png) (current)
- 23:14, 8 May 2017 (diff | hist) . . (0) . . File:Psnc3.png (Rf uploaded a new version of File:Psnc3.png) (current)
- 23:08, 8 May 2017 (diff | hist) . . (0) . . N File:Sf1.png (Uploaded with SimpleBatchUpload)
- 23:06, 8 May 2017 (diff | hist) . . (0) . . N File:Ptsq4.png (Uploaded with SimpleBatchUpload) (current)
- 23:06, 8 May 2017 (diff | hist) . . (0) . . N File:Bimods.png (Uploaded with SimpleBatchUpload) (current)
- 23:06, 8 May 2017 (diff | hist) . . (0) . . N File:Ptsq3.png (Uploaded with SimpleBatchUpload) (current)
- 23:05, 8 May 2017 (diff | hist) . . (0) . . N File:Gff.png (Uploaded with SimpleBatchUpload) (current)
- 23:04, 8 May 2017 (diff | hist) . . (0) . . N File:Psnc3.png (Uploaded with SimpleBatchUpload)
- 23:04, 8 May 2017 (diff | hist) . . (0) . . N File:Pbgcc3.png (Uploaded with SimpleBatchUpload) (current)
- 23:04, 8 May 2017 (diff | hist) . . (0) . . N File:Ovrep3.png (Uploaded with SimpleBatchUpload) (current)
- 23:03, 8 May 2017 (diff | hist) . . (0) . . N File:Pbsqb3.png (Uploaded with SimpleBatchUpload) (current)
- 23:03, 8 May 2017 (diff | hist) . . (0) . . N File:Pbsc3.png (Uploaded with SimpleBatchUpload) (current)
- 23:03, 8 May 2017 (diff | hist) . . (0) . . N File:Psgcc3.png (Uploaded with SimpleBatchUpload) (current)
- 23:03, 8 May 2017 (diff | hist) . . (0) . . File:Pbsqb4.png (Rf uploaded a new version of File:Pbsqb4.png) (current)
- 23:02, 8 May 2017 (diff | hist) . . (-2,891) . . Quality Control and Preprocessing Talk
- 22:28, 8 May 2017 (diff | hist) . . (+1) . . Visualisation of mapped reads
- 21:45, 8 May 2017 (diff | hist) . . (+665) . . I2rda Course Cheatsheet
- 21:25, 8 May 2017 (diff | hist) . . (+53) . . Visualisation of mapped reads
- 21:23, 8 May 2017 (diff | hist) . . (-61) . . Visualisation of mapped reads
- 19:38, 8 May 2017 (diff | hist) . . (+144) . . Visualisation of mapped reads
- 19:34, 8 May 2017 (diff | hist) . . (+3,569) . . N Visualisation of mapped reads (Created page with "= Introduction = In contrast to the other more quantitative stages, this exercise is qualitative in the sense that we get a visual feel for a certain area of interest. = Aim...")
- 19:24, 8 May 2017 (diff | hist) . . (+1) . . Quality of Mapping Exercise
- 19:17, 8 May 2017 (diff | hist) . . (+830) . . Quality of Mapping Exercise
- 18:43, 8 May 2017 (diff | hist) . . (+52) . . I2rda Course Cheatsheet
- 18:37, 8 May 2017 (diff | hist) . . (+423) . . I2rda Course Cheatsheet
- 16:02, 8 May 2017 (diff | hist) . . (+204) . . Quality Control and Preprocessing Exercise
- 12:19, 8 May 2017 (diff | hist) . . (0) . . Quality Control and Preprocessing Talk
- 12:18, 8 May 2017 (diff | hist) . . (-1) . . Quality Control and Preprocessing Talk
- 12:17, 8 May 2017 (diff | hist) . . (-28) . . Quality Control and Preprocessing Talk
- 12:17, 8 May 2017 (diff | hist) . . (+1) . . Quality Control and Preprocessing Talk
- 12:15, 8 May 2017 (diff | hist) . . (0) . . Quality Control and Preprocessing Talk
- 12:14, 8 May 2017 (diff | hist) . . (+29) . . Quality Control and Preprocessing Talk
- 12:13, 8 May 2017 (diff | hist) . . (-1) . . Quality Control and Preprocessing Talk
- 12:09, 8 May 2017 (diff | hist) . . (+142) . . Quality Control and Preprocessing Talk
- 12:06, 8 May 2017 (diff | hist) . . (+131) . . Quality Control and Preprocessing Talk
- 12:05, 8 May 2017 (diff | hist) . . (0) . . N File:Pbsqb4.png
- 11:54, 8 May 2017 (diff | hist) . . (0) . . N File:Multiqc.png (current)
- 01:41, 8 May 2017 (diff | hist) . . (0) . . N File:Ngsqc.png (Uploaded with SimpleBatchUpload) (current)
- 01:41, 8 May 2017 (diff | hist) . . (0) . . N File:Fastqc.png (Uploaded with SimpleBatchUpload) (current)
- 01:41, 8 May 2017 (diff | hist) . . (0) . . N File:Fastx.png (Uploaded with SimpleBatchUpload) (current)
- 01:41, 8 May 2017 (diff | hist) . . (0) . . N File:Fformat.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Ptsq2.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Ptsq.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Sf.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Sf2.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Psqs.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Psnc.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Sdl.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Psgcc.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Sascha.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Ovrep.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Pbsc.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Pbsqb.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Pbgcc.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Pbsqg.png (Uploaded with SimpleBatchUpload) (current)
- 01:30, 8 May 2017 (diff | hist) . . (0) . . N File:Ascii.png (current)
- 01:28, 8 May 2017 (diff | hist) . . (+6,858) . . N Quality Control and Preprocessing Talk (Created page with "Quality control and data pre-processing = Contents = * Data formats : – Fasta and Fastq formats : – Sequence quality encoding * Quality Control (QC) :– Evaluation of s...")
- 01:27, 8 May 2017 (diff | hist) . . (+6,858) . . N Quality Control Preprocessing Talk (Created page with "Quality control and data pre-processing = Contents = * Data formats : – Fasta and Fastq formats : – Sequence quality encoding * Quality Control (QC) :– Evaluation of s...") (current)
- 01:27, 8 May 2017 (diff | hist) . . (+6,858) . . N Quality and Control Preprocessing Talk (Created page with "Quality control and data pre-processing = Contents = * Data formats : – Fasta and Fastq formats : – Sequence quality encoding * Quality Control (QC) :– Evaluation of s...") (current)
- 01:16, 8 May 2017 (diff | hist) . . (+27) . . Quality of Mapping Exercise
- 21:22, 7 May 2017 (diff | hist) . . (-1) . . I2rda Course Cheatsheet
- 19:34, 7 May 2017 (diff | hist) . . (+398) . . I2rda Course Cheatsheet
- 19:26, 7 May 2017 (diff | hist) . . (-16) . . Quality of Mapping Exercise
- 19:23, 7 May 2017 (diff | hist) . . (0) . . Quality of Mapping Exercise
- 19:15, 7 May 2017 (diff | hist) . . (0) . . Quality of Mapping Exercise
- 19:14, 7 May 2017 (diff | hist) . . (+312) . . Quality of Mapping Exercise
- 19:13, 7 May 2017 (diff | hist) . . (+92) . . I2rda Course Cheatsheet
- 19:12, 7 May 2017 (diff | hist) . . (+164) . . I2rda Course Cheatsheet
- 19:10, 7 May 2017 (diff | hist) . . (+39) . . I2rda Course Cheatsheet
- 19:09, 7 May 2017 (diff | hist) . . (-1) . . I2rda Course Cheatsheet
- 19:08, 7 May 2017 (diff | hist) . . (+462) . . I2rda Course Cheatsheet
- 19:05, 7 May 2017 (diff | hist) . . (-1) . . I2rda Course Cheatsheet
- 19:04, 7 May 2017 (diff | hist) . . (+33) . . I2rda Course Cheatsheet
- 19:02, 7 May 2017 (diff | hist) . . (-1,673) . . I2rda Course Cheatsheet
- 18:56, 7 May 2017 (diff | hist) . . (+213) . . I2rda Course Cheatsheet
- 18:54, 7 May 2017 (diff | hist) . . (-16,925) . . I2rda Course Cheatsheet
- 18:44, 7 May 2017 (diff | hist) . . (+23,298) . . N I2rda Course Cheatsheet (Created page with "= The Command-line (shell) = The real power of Linux/Unix systems is the command line. * Many programs and facilities are available through graphical options on Linux, but a...")
- 18:26, 7 May 2017 (diff | hist) . . (+447) . . Quality of Mapping Exercise
- 18:21, 7 May 2017 (diff | hist) . . (0) . . m Quality of Mapping Exercise (Rf moved page Quality of Mapping to Quality of Mapping Exercise)
- 18:21, 7 May 2017 (diff | hist) . . (+41) . . N Quality of Mapping (Rf moved page Quality of Mapping to Quality of Mapping Exercise) (current)
- 18:10, 7 May 2017 (diff | hist) . . (+370) . . Intro to RNA-Seq Data Analysis Course
- 17:51, 7 May 2017 (diff | hist) . . (+27) . . Tophat (current)
- 17:49, 7 May 2017 (diff | hist) . . (+17) . . Main Page
- 17:47, 7 May 2017 (diff | hist) . . (+947) . . Tophat
- 17:35, 7 May 2017 (diff | hist) . . (+372) . . N Tophat (Created page with "Introduction = The well known sloice-aware aligner or mapper, now being phased out in favour of HISAT2 = Usage = module load tophat This will load the latest version (2.1...")
- 17:21, 7 May 2017 (diff | hist) . . (+41) . . Mapping to Reference Exercise
- 17:18, 7 May 2017 (diff | hist) . . (+2,370) . . Mapping to Reference Exercise
- 15:52, 7 May 2017 (diff | hist) . . (+99) . . Mapping to Reference Exercise
- 15:52, 7 May 2017 (diff | hist) . . (+2,460) . . Mapping to Reference (current)
- 15:13, 7 May 2017 (diff | hist) . . (+165) . . Intro to RNA-Seq Data Analysis Course
- 14:16, 7 May 2017 (diff | hist) . . (+84) . . Intro to RNA-Seq Data Analysis Course
- 14:12, 7 May 2017 (diff | hist) . . (+10) . . Intro to RNA-Seq Data Analysis Course
- 14:11, 7 May 2017 (diff | hist) . . (+304) . . Intro to RNA-Seq Data Analysis Course
- 14:07, 7 May 2017 (diff | hist) . . (-894) . . Intro to RNA-Seq Data Analysis Course
- 13:43, 7 May 2017 (diff | hist) . . (+2,891) . . Intro to RNA-Seq Data Analysis Course
- 13:22, 7 May 2017 (diff | hist) . . (+4,181) . . N Mapping to Reference Talk (Created page with "Mapping to a reference genome = Contents = * Overview * Mapping process: Algorithms and tools * Mapping output: SAM/BAM specification Mapping to a reference genome U Trived...")
- 19:52, 6 May 2017 (diff | hist) . . (+32) . . N I2rda mqx (Rf moved page I2rda mqx to Quality of Mapping) (current)
- 19:52, 6 May 2017 (diff | hist) . . (0) . . m Quality of Mapping Exercise (Rf moved page I2rda mqx to Quality of Mapping)
- 16:48, 6 May 2017 (diff | hist) . . (+6) . . Mapping to Reference Exercise
- 16:40, 6 May 2017 (diff | hist) . . (-54) . . Mapping to Reference Exercise
- 16:17, 6 May 2017 (diff | hist) . . (+2,433) . . N Mapping to Reference Exercise (Created page with "= Aims = Mapping to a reference genome is a vital step to generate counts and do differential gene expression thereafter. For RNA-Seq data it is important to choose an aligne...")
- 16:35, 5 May 2017 (diff | hist) . . (+96) . . m Quality Control and Preprocessing Exercise
- 16:33, 5 May 2017 (diff | hist) . . (+36) . . Quality Control and Preprocessing Exercise
- 15:05, 5 May 2017 (diff | hist) . . (+400) . . Quality Control and Preprocessing Exercise
- 14:30, 5 May 2017 (diff | hist) . . (+287) . . Quality Control and Preprocessing Exercise
- 14:25, 5 May 2017 (diff | hist) . . (+1) . . Ea-utils (current)
- 14:23, 5 May 2017 (diff | hist) . . (+681) . . Ea-utils
- 13:36, 5 May 2017 (diff | hist) . . (+4,220) . . N Ea-utils (Created page with "= Usage of Cluster= * Cluster Manual * Why a Queue Manager? * Available Software = Documented Programs = The following can be seen as extra notes referring to th...")
- 13:35, 5 May 2017 (diff | hist) . . (+16) . . Main Page
- 12:48, 5 May 2017 (diff | hist) . . (-165) . . Quality Control and Preprocessing Exercise
- 09:47, 5 May 2017 (diff | hist) . . (+7,908) . . N Differential Expression Talk (Created page with "07 Differential expression analysis = Goals = Three overall: Primarily, it's about: * Identify differentially expressed genes in two or more conditions (e.g. normal v cance...")
- 15:42, 4 May 2017 (diff | hist) . . (+1,013) . . Key Aspects of R Exercise
- 15:22, 4 May 2017 (diff | hist) . . (0) . . m Key Aspects of R Exercise (Rf moved page Key Aspects of R to Key Aspects of R Exercise)
- 15:22, 4 May 2017 (diff | hist) . . (+39) . . N Key Aspects of R (Rf moved page Key Aspects of R to Key Aspects of R Exercise) (current)
- 15:22, 4 May 2017 (diff | hist) . . (0) . . m Key Aspects of R Exercise (Rf moved page I2rda karx to Key Aspects of R)
- 15:22, 4 May 2017 (diff | hist) . . (+30) . . N I2rda karx (Rf moved page I2rda karx to Key Aspects of R) (current)
- 15:12, 4 May 2017 (diff | hist) . . (+551) . . Differential Expression Exercise
- 14:48, 4 May 2017 (diff | hist) . . (+521) . . Differential Expression Exercise
- 14:40, 4 May 2017 (diff | hist) . . (0) . . m Estimating Gene Count Exercise (Rf moved page I2rda egcx to Estimating Gene Count Exercise over redirect)
- 14:40, 4 May 2017 (diff | hist) . . (+44) . . N I2rda egcx (Rf moved page I2rda egcx to Estimating Gene Count Exercise over redirect) (current)
- 14:40, 4 May 2017 (diff | hist) . . (0) . . m Functional Analysis Exercise (Rf moved page I2rda fax to Functional Analysis Exercise over redirect)
- 14:40, 4 May 2017 (diff | hist) . . (+42) . . N I2rda fax (Rf moved page I2rda fax to Functional Analysis Exercise over redirect) (current)
- 14:24, 4 May 2017 (diff | hist) . . (+76) . . N Intro to RNA-Seq Data Analysis Course (Created page with "= Organizations Details = = Layout of the Day = = Access to the Machines =")
- 14:12, 4 May 2017 (diff | hist) . . (0) . . m Differential Expression Exercise (Rf moved page I2rda dex to Differential Expression Exercise over redirect)
- 14:12, 4 May 2017 (diff | hist) . . (+46) . . N I2rda dex (Rf moved page I2rda dex to Differential Expression Exercise over redirect) (current)
- 14:00, 4 May 2017 (diff | hist) . . (0) . . m Quality Control and Preprocessing Exercise (Rf moved page Quality Control and Processing Exercise to Quality Control and Preprocessing Exercise)
- 14:00, 4 May 2017 (diff | hist) . . (+56) . . N Quality Control and Processing Exercise (Rf moved page Quality Control and Processing Exercise to Quality Control and Preprocessing Exercise) (current)
- 13:59, 4 May 2017 (diff | hist) . . (0) . . m Quality Control and Preprocessing Exercise (Rf moved page Quality Control and Processing Talk to Quality Control and Processing Exercise)
- 13:59, 4 May 2017 (diff | hist) . . (+53) . . N Quality Control and Processing Talk (Rf moved page Quality Control and Processing Talk to Quality Control and Processing Exercise) (current)
- 13:58, 4 May 2017 (diff | hist) . . (0) . . m Quality Control and Preprocessing Exercise (Rf moved page Qcpx to Quality Control and Processing Talk)
- 13:58, 4 May 2017 (diff | hist) . . (+49) . . N Qcpx (Rf moved page Qcpx to Quality Control and Processing Talk) (current)
- 13:56, 4 May 2017 (diff | hist) . . (0) . . m Functional Analysis Exercise (Rf moved page Functional Analysis Exercise to I2rda fax)
- 13:55, 4 May 2017 (diff | hist) . . (0) . . m Differential Expression Exercise (Rf moved page Differential Expression Exercise to I2rda dex)
- 13:54, 4 May 2017 (diff | hist) . . (0) . . m Estimating Gene Count Exercise (Rf moved page Estimating Gene Count Exercise to I2rda egcx)
- 13:53, 4 May 2017 (diff | hist) . . (0) . . m Quality Control and Preprocessing Exercise (Rf moved page Quality Control and Preprocessing to Qcpx)
- 13:53, 4 May 2017 (diff | hist) . . (+18) . . N Quality Control and Preprocessing (Rf moved page Quality Control and Preprocessing to Qcpx) (current)
- 13:52, 4 May 2017 (diff | hist) . . (0) . . m I2rda m2rx (Rf moved page Mapping to Reference to I2rda m2rx) (current)
- 13:52, 4 May 2017 (diff | hist) . . (+24) . . N Mapping to Reference (Rf moved page Mapping to Reference to I2rda m2rx)
- 13:52, 4 May 2017 (diff | hist) . . (0) . . m Quality of Mapping Exercise (Rf moved page Mapping Quality Exercise to I2rda mqx)
- 13:52, 4 May 2017 (diff | hist) . . (+23) . . N Mapping Quality Exercise (Rf moved page Mapping Quality Exercise to I2rda mqx) (current)
- 13:51, 4 May 2017 (diff | hist) . . (0) . . m Key Aspects of R Exercise (Rf moved page Key Aspects of using R to I2rda karx)
- 13:51, 4 May 2017 (diff | hist) . . (+24) . . N Key Aspects of using R (Rf moved page Key Aspects of using R to I2rda karx) (current)
- 13:13, 2 May 2017 (diff | hist) . . (+4) . . I2rdalinks (current)
- 13:11, 2 May 2017 (diff | hist) . . (+453) . . N I2rdalinks (Created page with "= Introduction = One day is a very short time to deal with such a big topic as RNA-Seq Data Analysis, so this is page of links which attendees can view later in order to supp...")
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