User contributions
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- 18:08, 28 March 2017 (diff | hist) . . (+43) . . Main Page
- 13:44, 27 March 2017 (diff | hist) . . (+2) . . Ariba (current)
- 13:43, 27 March 2017 (diff | hist) . . (+350) . . Ariba
- 13:41, 27 March 2017 (diff | hist) . . (+30) . . N Ariba (Created page with "= Introduction = = Links =")
- 13:22, 27 March 2017 (diff | hist) . . (+13) . . Main Page
- 00:10, 24 March 2017 (diff | hist) . . (+218) . . Poretools (current)
- 14:04, 23 March 2017 (diff | hist) . . (+246) . . Canu
- 13:26, 23 March 2017 (diff | hist) . . (+118) . . Canu
- 13:14, 23 March 2017 (diff | hist) . . (-1) . . Theoretical background (current)
- 12:48, 23 March 2017 (diff | hist) . . (-1) . . Theoretical background
- 12:35, 23 March 2017 (diff | hist) . . (+231) . . Theoretical background
- 12:30, 23 March 2017 (diff | hist) . . (-2) . . Theoretical background
- 12:30, 23 March 2017 (diff | hist) . . (+96) . . Theoretical background
- 12:26, 23 March 2017 (diff | hist) . . (+343) . . N Theoretical background (Created page with "= Introduction = == Why does Differential Gene Expression lead to such insightful analysis?== * Of course, all somatics cells have at least one copy of the genome * But just...")
- 12:20, 23 March 2017 (diff | hist) . . (+48) . . Main Page
- 18:46, 21 March 2017 (diff | hist) . . (-6) . . Main Page
- 18:44, 21 March 2017 (diff | hist) . . (-9) . . Main Page
- 18:42, 21 March 2017 (diff | hist) . . (+17) . . Main Page
- 18:38, 21 March 2017 (diff | hist) . . (+114) . . Main Page
- 19:05, 20 March 2017 (diff | hist) . . (+1,677) . . N Node9 network failure incident 16-20.03.2017 (Created page with "= Introduction = Node9 usually a perfectly behaving machine suddenly loses network connections. = Troubleshooting = Going through all the procedures to see which component...") (current)
- 18:59, 20 March 2017 (diff | hist) . . (+51) . . Main Page
- 12:44, 16 March 2017 (diff | hist) . . (0) . . Emailing
- 10:47, 16 March 2017 (diff | hist) . . (+6) . . Emailing
- 10:46, 16 March 2017 (diff | hist) . . (+1,606) . . N Emailing (Created page with "= Introduction = This is mainly about emailing users when their jobs are finished. Only an easy workable solution is presented and it relies on gmail servers and having a sp...")
- 10:30, 16 March 2017 (diff | hist) . . (+15) . . Main Page
- 19:13, 15 March 2017 (diff | hist) . . (+1,326) . . Canu
- 19:11, 15 March 2017 (diff | hist) . . (+291) . . Canu
- 18:17, 15 March 2017 (diff | hist) . . (+89) . . Canu
- 15:58, 15 March 2017 (diff | hist) . . (+191) . . CallSNPs.py
- 15:40, 15 March 2017 (diff | hist) . . (+409) . . CallSNPs.py
- 15:00, 15 March 2017 (diff | hist) . . (+105) . . GenomeTools
- 19:19, 14 March 2017 (diff | hist) . . (+379) . . CallSNPs.py
- 19:09, 14 March 2017 (diff | hist) . . (+278) . . CallSNPs.py
- 19:05, 14 March 2017 (diff | hist) . . (+71) . . CallSNPs.py
- 19:04, 14 March 2017 (diff | hist) . . (+138) . . CallSNPs.py
- 18:57, 14 March 2017 (diff | hist) . . (+300) . . CallSNPs.py
- 17:07, 14 March 2017 (diff | hist) . . (-107) . . Bottlenose dolphin population genomic analysis (current)
- 13:15, 14 March 2017 (diff | hist) . . (+24) . . MinKNOW folders and log files (current)
- 13:15, 14 March 2017 (diff | hist) . . (+168) . . MinKNOW folders and log files
- 13:05, 14 March 2017 (diff | hist) . . (+192) . . MinKNOW folders and log files
- 12:42, 14 March 2017 (diff | hist) . . (+86) . . MinKNOW folders and log files
- 12:41, 14 March 2017 (diff | hist) . . (+551) . . N MinKNOW folders and log files (Created page with "= Introduction = The way The MinKNOW program organises folder, and the makeup of its various log files is complicated. This page is an attempt to keep track of them = Folde...")
- 12:25, 14 March 2017 (diff | hist) . . (+36) . . Main Page
- 19:00, 13 March 2017 (diff | hist) . . (+267) . . One-liners
- 18:50, 13 March 2017 (diff | hist) . . (+350) . . N One-liners (Created page with " You have a genome coverage file in bedgraph format (final, fourth column is the coverage for a particular section) amd would like to find the max value: awk '{if($4>mxc) m...")
- 18:29, 13 March 2017 (diff | hist) . . (+34) . . Main Page
- 18:05, 13 March 2017 (diff | hist) . . (+132) . . Bedtools (current)
- 17:51, 13 March 2017 (diff | hist) . . (+60) . . Samtools
- 16:07, 13 March 2017 (diff | hist) . . (+45) . . Samtools
- 16:00, 13 March 2017 (diff | hist) . . (+549) . . Mash (current)
- 15:04, 13 March 2017 (diff | hist) . . (+899) . . Satsuma (current)
- 14:52, 13 March 2017 (diff | hist) . . (+1) . . Mash
- 14:39, 13 March 2017 (diff | hist) . . (+190) . . Bwa
- 14:23, 13 March 2017 (diff | hist) . . (+390) . . Bwa
- 14:17, 13 March 2017 (diff | hist) . . (+202) . . Bwa
- 13:59, 13 March 2017 (diff | hist) . . (+152) . . N GenomeTools (Created page with "= Introduction = Typically use in conjunction with bedtools and bedops. Includes AnnotationSketch, which is able to render a PNG image from a gff file")
- 13:57, 13 March 2017 (diff | hist) . . (+18) . . Main Page
- 12:14, 13 March 2017 (diff | hist) . . (+118) . . NanoSim (current)
- 12:01, 13 March 2017 (diff | hist) . . (+290) . . Last (current)
- 11:44, 13 March 2017 (diff | hist) . . (+132) . . N NanoSim (Created page with "= Introduction = One of the few, may be even the only, Nanopore read simulator = Requirements = Needs the LAST program and numpy.")
- 11:43, 13 March 2017 (diff | hist) . . (+14) . . Main Page
- 00:48, 13 March 2017 (diff | hist) . . (+69) . . Canu
- 00:44, 13 March 2017 (diff | hist) . . (+11,080) . . Canu
- 23:59, 12 March 2017 (diff | hist) . . (+1) . . Canu
- 15:37, 11 March 2017 (diff | hist) . . (+74) . . Canu
- 18:24, 10 March 2017 (diff | hist) . . (+505) . . Lastz (current)
- 16:21, 10 March 2017 (diff | hist) . . (+71) . . N Lastz (Created page with "= Introduction = An aligner that can map entire genomes to each other.")
- 16:20, 10 March 2017 (diff | hist) . . (+200) . . N Last (Created page with "= Introduction = An aligner that is insensitive to repeat regions. This makes it suitable for mapping sequences against entire genomes. Its chief usage idea is that of not...")
- 16:17, 10 March 2017 (diff | hist) . . (+12) . . Main Page
- 15:11, 10 March 2017 (diff | hist) . . (+4) . . Satsuma
- 15:10, 10 March 2017 (diff | hist) . . (+1,016) . . N Satsuma (Created page with "= Introduction = Synteny-focused aligner = Usage = To load the module: module load satsuma The main executable is Satsuma = Help file output = Satsuma: Wrapper around...")
- 15:08, 10 March 2017 (diff | hist) . . (+14) . . Main Page
- 18:38, 9 March 2017 (diff | hist) . . (+1,529) . . Canu
- 18:25, 9 March 2017 (diff | hist) . . (+98) . . Canu
- 18:17, 9 March 2017 (diff | hist) . . (+346) . . Canu
- 17:34, 9 March 2017 (diff | hist) . . (-51) . . Repeatmasker
- 15:51, 9 March 2017 (diff | hist) . . (+111) . . Picard-tools (current)
- 15:49, 9 March 2017 (diff | hist) . . (+25) . . Picard-tools
- 15:47, 9 March 2017 (diff | hist) . . (+1,934) . . Picard-tools
- 15:37, 9 March 2017 (diff | hist) . . (+35) . . Picard-tools
- 15:33, 9 March 2017 (diff | hist) . . (+219) . . N Canu (Created page with "= Introduction = This is the de-novo genome assembler for long read technologies: mainly PacBio and Oxford Nanopore (MinION). It comes from the Maryland Bioinformatics Labor...")
- 15:30, 9 March 2017 (diff | hist) . . (+11) . . Main Page
- 14:59, 8 March 2017 (diff | hist) . . (+2) . . Mash
- 13:18, 8 March 2017 (diff | hist) . . (+163) . . RAxML (current)
- 13:01, 8 March 2017 (diff | hist) . . (+158) . . Mash
- 12:59, 8 March 2017 (diff | hist) . . (+463) . . Mash
- 12:55, 8 March 2017 (diff | hist) . . (-3) . . Mash
- 12:54, 8 March 2017 (diff | hist) . . (-12) . . Mash
- 12:53, 8 March 2017 (diff | hist) . . (+3,937) . . Mash
- 12:44, 8 March 2017 (diff | hist) . . (+591) . . Mash
- 12:42, 8 March 2017 (diff | hist) . . (+173) . . Mash
- 12:40, 8 March 2017 (diff | hist) . . (-1) . . Mash
- 12:39, 8 March 2017 (diff | hist) . . (+1,670) . . Mash
- 12:33, 8 March 2017 (diff | hist) . . (-10) . . Mash
- 12:32, 8 March 2017 (diff | hist) . . (+1,253) . . Mash
- 12:26, 8 March 2017 (diff | hist) . . (+995) . . Mash
- 12:04, 8 March 2017 (diff | hist) . . (+511) . . Mash
- 12:00, 8 March 2017 (diff | hist) . . (+156) . . Mash
- 11:38, 8 March 2017 (diff | hist) . . (+1) . . Mash
- 11:37, 8 March 2017 (diff | hist) . . (-196) . . Mash
- 11:36, 8 March 2017 (diff | hist) . . (+1,065) . . Mash
- 11:33, 8 March 2017 (diff | hist) . . (+535) . . Mash
- 11:24, 8 March 2017 (diff | hist) . . (+1,342) . . Mash
- 11:21, 8 March 2017 (diff | hist) . . (+640) . . Mash
- 17:13, 5 March 2017 (diff | hist) . . (+244) . . Bedtools
- 17:05, 5 March 2017 (diff | hist) . . (+408) . . Bedtools
- 16:50, 5 March 2017 (diff | hist) . . (+562) . . Bedtools
- 16:29, 5 March 2017 (diff | hist) . . (+2) . . Bedtools
- 16:07, 5 March 2017 (diff | hist) . . (+130) . . Bedtools
- 16:06, 5 March 2017 (diff | hist) . . (+804) . . Bedtools
- 23:42, 4 March 2017 (diff | hist) . . (+495) . . Calculating coverage (current)
- 12:48, 3 March 2017 (diff | hist) . . (+226) . . N Albacore (Created page with "= Introduction = Basecalling software from Oxford Nanopore. Does not work on Windows. Only Mac OS X, Ubuntu Trusty and Ubuntu Xenial. = Usage = read_fast5_basecaller.py -...")
- 12:46, 3 March 2017 (diff | hist) . . (+15) . . Main Page
- 15:09, 2 March 2017 (diff | hist) . . (-56) . . Samtools
- 15:06, 2 March 2017 (diff | hist) . . (+85) . . Samtools
- 12:38, 28 February 2017 (diff | hist) . . (+97) . . N Links (Created page with " = Command line tips = * [https://zellwk.com/blog/fear-of-command-line fear of the command line]") (current)
- 12:37, 28 February 2017 (diff | hist) . . (+12) . . Main Page
- 23:48, 27 February 2017 (diff | hist) . . (+11) . . Main Page
- 18:31, 25 February 2017 (diff | hist) . . (+86) . . Bcftools (current)
- 18:06, 25 February 2017 (diff | hist) . . (+142) . . Bcftools
- 17:55, 25 February 2017 (diff | hist) . . (+87) . . Bcftools
- 17:27, 25 February 2017 (diff | hist) . . (+556) . . N Bcftools (Created page with "= Introduction = This is a VCF manipulation suite from Heng Li, author of samtools. It is included in the samtools package, but is not a series of subcommands under samtools,...")
- 17:19, 25 February 2017 (diff | hist) . . (-3) . . Main Page
- 17:19, 25 February 2017 (diff | hist) . . (+18) . . Main Page
- 15:39, 23 February 2017 (diff | hist) . . (-996) . . Trinity Protocol
- 15:18, 23 February 2017 (diff | hist) . . (+102) . . RSeQC (current)
- 14:37, 23 February 2017 (diff | hist) . . (+269) . . RSeQC
- 14:35, 23 February 2017 (diff | hist) . . (+255) . . N RSeQC (Created page with "= Introduction = This is a python package (so no special module loading is required) and is especially used for its '''inner_distance.py''' script. = Usage = inner_distanc...")
- 14:30, 23 February 2017 (diff | hist) . . (+12) . . Main Page
- 14:15, 23 February 2017 (diff | hist) . . (-312) . . Trinity Protocol
- 12:48, 23 February 2017 (diff | hist) . . (+83) . . Mapping.py (current)
- 12:46, 23 February 2017 (diff | hist) . . (+1,641) . . N Mapping.py (Created page with "= Introduction = Another part of Miguel Pnheiros script_tools suite. = Outline = Each pair of FASTQ files are mapped to the reference. Bowtie, bwa or smalt are available....")
- 12:39, 23 February 2017 (diff | hist) . . (+17) . . Main Page
- 00:26, 21 February 2017 (diff | hist) . . (+373) . . Bwa
- 19:08, 17 February 2017 (diff | hist) . . (+1,913) . . N Memory repair glitch 16.02.2017 (Created page with "= Introduction = As detailed in the hardware section, there has been ongoing memory correction warnings for something like an entire year now. In December, I had finally got...") (current)
- 15:50, 17 February 2017 (diff | hist) . . (+38) . . Main Page
- 19:40, 15 February 2017 (diff | hist) . . (0) . . Picard-tools
- 19:39, 15 February 2017 (diff | hist) . . (+312) . . Picard-tools
- 19:22, 15 February 2017 (diff | hist) . . (+838) . . N Picard-tools (Created page with "= Introduction = Started as a companion package to GATK, so that GATK could concentrate on its core functions, but has blossomed beyond that to be quite substnatial in its ow...")
- 19:03, 15 February 2017 (diff | hist) . . (+19) . . Main Page
- 16:44, 15 February 2017 (diff | hist) . . (+33) . . Hardware Issues
- 16:40, 15 February 2017 (diff | hist) . . (+283) . . Hardware Issues
- 15:14, 15 February 2017 (diff | hist) . . (+227) . . Samtools
- 14:45, 15 February 2017 (diff | hist) . . (+63) . . Samtools
- 14:43, 15 February 2017 (diff | hist) . . (+155) . . Samtools
- 12:18, 15 February 2017 (diff | hist) . . (+439) . . Bwa
- 18:30, 14 February 2017 (diff | hist) . . (+39) . . Quast (current)
- 18:29, 14 February 2017 (diff | hist) . . (+461) . . Quast
- 12:15, 14 February 2017 (diff | hist) . . (+667) . . Sickle (current)
- 12:07, 14 February 2017 (diff | hist) . . (+180) . . N Sickle (Created page with "= Introduction = Used for trimming FASTQ files based on quality. This is not a complicated program. built in C and using Heng Li's '''kseq.h''' convenient macros file. = Us...")
- 12:06, 14 February 2017 (diff | hist) . . (+13) . . Main Page
- 12:54, 13 February 2017 (diff | hist) . . (+148) . . Poretools
- 17:49, 10 February 2017 (diff | hist) . . (+340) . . Assembly-stats (current)
- 17:25, 10 February 2017 (diff | hist) . . (+464) . . N Assembly-stats (Created page with "= Introductions = Some assembly programs do not output any summary details regarding the assembly they produce. This program is useful in listing out various ket quality (or...")
- 16:48, 10 February 2017 (diff | hist) . . (+245) . . Main Page
- 16:42, 10 February 2017 (diff | hist) . . (+21) . . Main Page
- 16:28, 10 February 2017 (diff | hist) . . (+83) . . SPAdes (current)
- 16:27, 10 February 2017 (diff | hist) . . (+96) . . SPAdes
- 16:16, 10 February 2017 (diff | hist) . . (+204) . . SPAdes
- 16:13, 10 February 2017 (diff | hist) . . (+176) . . SPAdes
- 16:04, 10 February 2017 (diff | hist) . . (+150) . . SPAdes
- 15:53, 10 February 2017 (diff | hist) . . (+443) . . SPAdes
- 15:38, 10 February 2017 (diff | hist) . . (+5) . . SPAdes
- 15:24, 10 February 2017 (diff | hist) . . (+5) . . SPAdes
- 15:21, 10 February 2017 (diff | hist) . . (-19) . . SPAdes
- 15:18, 10 February 2017 (diff | hist) . . (+6) . . SPAdes
- 15:15, 10 February 2017 (diff | hist) . . (+148) . . SPAdes
- 13:27, 10 February 2017 (diff | hist) . . (+61) . . Quast
- 17:43, 9 February 2017 (diff | hist) . . (+27) . . Quast
- 17:35, 9 February 2017 (diff | hist) . . (-2,127) . . MinION (Oxford Nanopore)
- 17:34, 9 February 2017 (diff | hist) . . (+2,195) . . N Poretools (Created page with "= Introduction Python tools for analysing fast5 files, which are output by the MinION sequencing system. = Usage = == Example == poretools fastq 5CG6210Y8Z_20160816_FNFA...")
- 17:54, 8 February 2017 (diff | hist) . . (+89) . . MinION (Oxford Nanopore)
- 14:35, 8 February 2017 (diff | hist) . . (+579) . . MinION (Oxford Nanopore)
- 13:03, 8 February 2017 (diff | hist) . . (+208) . . MinION (Oxford Nanopore)
- 16:18, 7 February 2017 (diff | hist) . . (+11) . . R (up) (current)
- 15:44, 7 February 2017 (diff | hist) . . (+132) . . R (up)
- 15:28, 7 February 2017 (diff | hist) . . (+26) . . R
- 15:19, 7 February 2017 (diff | hist) . . (+543) . . R
- 13:30, 7 February 2017 (diff | hist) . . (+63) . . R
- 13:24, 7 February 2017 (diff | hist) . . (+832) . . R
- 12:50, 7 February 2017 (diff | hist) . . (+80) . . R
- 12:43, 7 February 2017 (diff | hist) . . (+146) . . R
- 12:14, 7 February 2017 (diff | hist) . . (+513) . . N R (Created page with "= Introduction = This is a well known open source statistics packages and there is abundant information on the internet about using it. Marvin's R version is 3.2.1 which dat...")
- 11:59, 7 February 2017 (diff | hist) . . (+8) . . Main Page
- 18:49, 6 February 2017 (diff | hist) . . (0) . . Quast
- 16:34, 6 February 2017 (diff | hist) . . (+132) . . N PoRe (Created page with "= Introduction = R package for handling fast5 and MinION runs = Links = [https://github.com/mw55309/poRe_docs main documentation]") (current)
- 16:32, 6 February 2017 (diff | hist) . . (+27) . . Main Page
- 15:45, 6 February 2017 (diff | hist) . . (+618) . . Quast
- 14:40, 6 February 2017 (diff | hist) . . (+305) . . N Quast (Created page with "= Introduction = Quast is a software package that assesses genome assemblies. It is developed by the group that develops SPAdes. = Usage = To load: module load quast An...")
- 14:32, 6 February 2017 (diff | hist) . . (+12) . . Main Page
- 17:49, 3 February 2017 (diff | hist) . . (+229) . . MinION (Oxford Nanopore)
- 16:48, 3 February 2017 (diff | hist) . . (+262) . . MinION (Oxford Nanopore)
- 16:43, 3 February 2017 (diff | hist) . . (+160) . . MinION (Oxford Nanopore)
- 19:21, 2 February 2017 (diff | hist) . . (+63) . . MinION (Oxford Nanopore)
- 19:17, 2 February 2017 (diff | hist) . . (-1) . . MinION (Oxford Nanopore)
- 17:31, 2 February 2017 (diff | hist) . . (+33) . . MinION (Oxford Nanopore)
- 17:30, 2 February 2017 (diff | hist) . . (+88) . . MinION (Oxford Nanopore)
- 17:29, 2 February 2017 (diff | hist) . . (+71) . . MinION (Oxford Nanopore)
- 17:27, 2 February 2017 (diff | hist) . . (-108) . . MinION (Oxford Nanopore)
- 17:24, 2 February 2017 (diff | hist) . . (+77) . . MinION (Oxford Nanopore)
- 17:24, 2 February 2017 (diff | hist) . . (+215) . . MinION (Oxford Nanopore)
- 17:19, 2 February 2017 (diff | hist) . . (+603) . . MinION (Oxford Nanopore)
- 17:14, 2 February 2017 (diff | hist) . . (+139) . . MinION (Oxford Nanopore)
- 17:12, 2 February 2017 (diff | hist) . . (+157) . . MinION (Oxford Nanopore)
- 17:01, 2 February 2017 (diff | hist) . . (+199) . . MinION (Oxford Nanopore)
- 16:50, 2 February 2017 (diff | hist) . . (+116) . . MinION (Oxford Nanopore)
- 16:48, 2 February 2017 (diff | hist) . . (+112) . . MinION (Oxford Nanopore)
- 16:45, 2 February 2017 (diff | hist) . . (+27) . . MinION (Oxford Nanopore)
- 16:44, 2 February 2017 (diff | hist) . . (+428) . . MinION (Oxford Nanopore)
- 16:41, 2 February 2017 (diff | hist) . . (-2) . . MinION (Oxford Nanopore)
- 16:40, 2 February 2017 (diff | hist) . . (+95) . . MinION (Oxford Nanopore)
- 16:35, 2 February 2017 (diff | hist) . . (+111) . . MinION (Oxford Nanopore)
- 16:33, 2 February 2017 (diff | hist) . . (+226) . . MinION (Oxford Nanopore)
- 16:29, 2 February 2017 (diff | hist) . . (+2) . . MinION (Oxford Nanopore)
- 16:28, 2 February 2017 (diff | hist) . . (+91) . . MinION (Oxford Nanopore)
- 16:27, 2 February 2017 (diff | hist) . . (0) . . N File:Joshquick f1000.pdf (current)
- 16:27, 2 February 2017 (diff | hist) . . (-5) . . MinION (Oxford Nanopore)
- 16:17, 2 February 2017 (diff | hist) . . (+43) . . MinION (Oxford Nanopore)
- 16:13, 2 February 2017 (diff | hist) . . (+1) . . MinION (Oxford Nanopore)
- 16:12, 2 February 2017 (diff | hist) . . (-5) . . MinION (Oxford Nanopore)
- 16:10, 2 February 2017 (diff | hist) . . (+5) . . MinION (Oxford Nanopore)
- 16:10, 2 February 2017 (diff | hist) . . (+1) . . MinION (Oxford Nanopore)
- 16:08, 2 February 2017 (diff | hist) . . (+1) . . MinION (Oxford Nanopore)
- 16:08, 2 February 2017 (diff | hist) . . (+40) . . MinION (Oxford Nanopore)
- 16:06, 2 February 2017 (diff | hist) . . (0) . . N File:PoreCamp2016 Running MinION.pdf (current)
- 16:01, 2 February 2017 (diff | hist) . . (+46) . . MinION (Oxford Nanopore)
- 15:56, 2 February 2017 (diff | hist) . . (+218) . . MinION (Oxford Nanopore)
- 15:43, 2 February 2017 (diff | hist) . . (+1) . . MinION (Oxford Nanopore)
- 15:39, 2 February 2017 (diff | hist) . . (+151) . . MinION (Oxford Nanopore)
- 15:35, 2 February 2017 (diff | hist) . . (+226) . . MinION (Oxford Nanopore)
- 15:31, 2 February 2017 (diff | hist) . . (+47) . . SPAdes
- 15:18, 2 February 2017 (diff | hist) . . (+441) . . MinION (Oxford Nanopore)
- 15:10, 2 February 2017 (diff | hist) . . (+259) . . MinION (Oxford Nanopore)
- 14:59, 2 February 2017 (diff | hist) . . (+82) . . MinION (Oxford Nanopore)
- 14:47, 2 February 2017 (diff | hist) . . (+10) . . MinION (Oxford Nanopore)
- 14:45, 2 February 2017 (diff | hist) . . (+30) . . MinION (Oxford Nanopore)
- 14:44, 2 February 2017 (diff | hist) . . (0) . . N File:Prep0.png (current)
- 14:43, 2 February 2017 (diff | hist) . . (0) . . N File:Pore0.png (current)
- 14:42, 2 February 2017 (diff | hist) . . (+308) . . MinION (Oxford Nanopore)
- 14:24, 2 February 2017 (diff | hist) . . (+830) . . MinION (Oxford Nanopore)
- 12:35, 2 February 2017 (diff | hist) . . (+84) . . MinION (Oxford Nanopore)
- 12:28, 2 February 2017 (diff | hist) . . (-2) . . MinION (Oxford Nanopore)
- 12:28, 2 February 2017 (diff | hist) . . (+35) . . MinION (Oxford Nanopore)
- 12:26, 2 February 2017 (diff | hist) . . (+309) . . MinION (Oxford Nanopore)
- 12:17, 2 February 2017 (diff | hist) . . (+388) . . MinION (Oxford Nanopore)
- 11:59, 2 February 2017 (diff | hist) . . (+208) . . MinION (Oxford Nanopore)
- 11:55, 2 February 2017 (diff | hist) . . (+150) . . MinION (Oxford Nanopore)
- 11:47, 2 February 2017 (diff | hist) . . (+296) . . MinION (Oxford Nanopore)
- 11:39, 2 February 2017 (diff | hist) . . (+20) . . MinION (Oxford Nanopore)
- 11:38, 2 February 2017 (diff | hist) . . (0) . . N File:Ana0.png (current)
- 11:35, 2 February 2017 (diff | hist) . . (+131) . . MinION (Oxford Nanopore)
- 11:32, 2 February 2017 (diff | hist) . . (+149) . . MinION (Oxford Nanopore)
- 16:29, 1 February 2017 (diff | hist) . . (+122) . . MinION (Oxford Nanopore)
- 15:56, 1 February 2017 (diff | hist) . . (+485) . . MinION (Oxford Nanopore)
- 15:42, 1 February 2017 (diff | hist) . . (+290) . . N MinION (Oxford Nanopore) (Created page with "= Introduction = Entirely unique sequencing method, where the flowcell is inserted into a USB container, and from there plugged into a computer. Due to its small size in com...")
- 15:40, 1 February 2017 (diff | hist) . . (+31) . . Main Page
- 13:05, 1 February 2017 (diff | hist) . . (+1) . . Roary
- 13:05, 1 February 2017 (diff | hist) . . (+57) . . Roary
- 13:04, 1 February 2017 (diff | hist) . . (+203) . . N Roary (Created page with "= Introductio= = Usage tutorial = The tutorial located [https://github.com/microgenomics/tutorials/blob/master/pangenome.md here] is a good way to both test and get aquainte...")
- 13:02, 1 February 2017 (diff | hist) . . (+12) . . Main Page
- 16:25, 31 January 2017 (diff | hist) . . (+9) . . BUSCO (current)
- 16:24, 31 January 2017 (diff | hist) . . (-4) . . BUSCO
- 15:29, 31 January 2017 (diff | hist) . . (+39) . . BUSCO
- 15:28, 31 January 2017 (diff | hist) . . (0) . . BUSCO
- 15:19, 31 January 2017 (diff | hist) . . (+17) . . BUSCO
- 15:57, 30 January 2017 (diff | hist) . . (-2) . . Detonate (current)
- 15:57, 30 January 2017 (diff | hist) . . (+93) . . Detonate
- 15:48, 30 January 2017 (diff | hist) . . (+6) . . Detonate
- 15:47, 30 January 2017 (diff | hist) . . (+1) . . Detonate
- 15:46, 30 January 2017 (diff | hist) . . (+2) . . Detonate
- 15:45, 30 January 2017 (diff | hist) . . (+420) . . Detonate
- 15:35, 30 January 2017 (diff | hist) . . (+8) . . Detonate
- 15:35, 30 January 2017 (diff | hist) . . (+1) . . Detonate
- 15:34, 30 January 2017 (diff | hist) . . (+457) . . Detonate
- 15:14, 30 January 2017 (diff | hist) . . (+382) . . Detonate
- 15:01, 30 January 2017 (diff | hist) . . (+157) . . Detonate
- 14:42, 30 January 2017 (diff | hist) . . (+252) . . Detonate
- 14:35, 30 January 2017 (diff | hist) . . (+125) . . Detonate
- 14:31, 30 January 2017 (diff | hist) . . (+179) . . Detonate
- 14:27, 30 January 2017 (diff | hist) . . (+49) . . Detonate
- 14:05, 30 January 2017 (diff | hist) . . (+444) . . Detonate
- 13:24, 30 January 2017 (diff | hist) . . (+47) . . Detonate
- 13:23, 30 January 2017 (diff | hist) . . (+40) . . Detonate
- 13:23, 30 January 2017 (diff | hist) . . (0) . . Detonate
- 13:22, 30 January 2017 (diff | hist) . . (0) . . Detonate
- 13:22, 30 January 2017 (diff | hist) . . (0) . . Detonate
- 13:22, 30 January 2017 (diff | hist) . . (0) . . Detonate
- 13:22, 30 January 2017 (diff | hist) . . (+534) . . N Detonate (Created page with "= Introduction = Quality evaulation of a de-novo transcriptome assembly from the creators of RSEM (Deweylab). = Layout = Two main aspects to this program. Also included her...")
- 13:13, 30 January 2017 (diff | hist) . . (+15) . . Main Page
- 17:49, 27 January 2017 (diff | hist) . . (+24) . . Trinity (current)
- 17:40, 27 January 2017 (diff | hist) . . (+230) . . Trinity
- 17:25, 27 January 2017 (diff | hist) . . (+1) . . Trinity
- 17:24, 27 January 2017 (diff | hist) . . (+205) . . Trinity
- 17:05, 27 January 2017 (diff | hist) . . (-128) . . Trinity
- 17:04, 27 January 2017 (diff | hist) . . (-342) . . Trinity
- 16:47, 27 January 2017 (diff | hist) . . (-219) . . Trinity
- 16:43, 27 January 2017 (diff | hist) . . (-1,561) . . Trinity
- 16:19, 27 January 2017 (diff | hist) . . (+299) . . Trinity
- 16:16, 27 January 2017 (diff | hist) . . (-1,261) . . Trinity
- 15:59, 27 January 2017 (diff | hist) . . (-362) . . Trinity
- 15:41, 27 January 2017 (diff | hist) . . (-38) . . Trinity
- 15:39, 27 January 2017 (diff | hist) . . (+12,665) . . N Trinity (Created page with "=Introduction= The widely established tool for transcriptome assembly. = Version 2.3.2, full help file = This is an editted version. With the module loaded, type Trinity -...")
- 15:33, 27 January 2017 (diff | hist) . . (+14) . . Main Page
- 11:36, 26 January 2017 (diff | hist) . . (-9) . . ETE (current)
- 11:35, 26 January 2017 (diff | hist) . . (+260) . . ETE
- 11:33, 26 January 2017 (diff | hist) . . (+247) . . N ETE (Created page with "= Introduction = A python library for phylogenetic tree visualisation and manipulation. Its functionality overlaps with dendropy, though it has a stronger emphasis on visuali...")
- 11:31, 26 January 2017 (diff | hist) . . (+10) . . Main Page
- 17:54, 18 January 2017 (diff | hist) . . (+1,229) . . H: drive on cluster
- 13:08, 17 January 2017 (diff | hist) . . (-1) . . SPAdes
- 12:57, 17 January 2017 (diff | hist) . . (+145) . . Mash
- 10:34, 17 January 2017 (diff | hist) . . (+389) . . H: drive on cluster
- 18:37, 16 January 2017 (diff | hist) . . (-3) . . H: drive on cluster
- 18:21, 16 January 2017 (diff | hist) . . (-1) . . H: drive on cluster
- 18:16, 16 January 2017 (diff | hist) . . (+145) . . H: drive on cluster
- 18:12, 16 January 2017 (diff | hist) . . (+126) . . H: drive on cluster
- 18:10, 16 January 2017 (diff | hist) . . (+124) . . H: drive on cluster
- 18:01, 16 January 2017 (diff | hist) . . (+356) . . H: drive on cluster
- 17:49, 16 January 2017 (diff | hist) . . (+255) . . H: drive on cluster
- 16:42, 16 January 2017 (diff | hist) . . (+8) . . H: drive on cluster
- 14:24, 16 January 2017 (diff | hist) . . (0) . . Srst2 (current)
- 14:23, 16 January 2017 (diff | hist) . . (+20) . . Srst2
- 14:10, 16 January 2017 (diff | hist) . . (-14) . . Main Page
- 16:17, 12 January 2017 (diff | hist) . . (+29) . . RAxML
- 11:59, 12 January 2017 (diff | hist) . . (+116) . . Srst2
- 11:57, 12 January 2017 (diff | hist) . . (+86) . . Srst2
- 18:15, 11 January 2017 (diff | hist) . . (+58) . . Mash
- 18:07, 11 January 2017 (diff | hist) . . (+17) . . Mash
- 18:06, 11 January 2017 (diff | hist) . . (+247) . . N Mash (Created page with "= Introduction = MinHash is a general dimensionality-reduction technique and it is used by Mash to reduce large sequences and sequence sets to small, representative sketches...")
- 18:00, 11 January 2017 (diff | hist) . . (+11) . . Main Page
- 16:06, 10 January 2017 (diff | hist) . . (-1) . . Samtools
- 13:48, 10 January 2017 (diff | hist) . . (+284) . . Samtools
- 12:53, 10 January 2017 (diff | hist) . . (+85) . . N SAN disconnect incident 10.01.2017 (Created page with "= Introduction = * Normal user can't login * marvin is up, but only root can log in") (current)
- 12:51, 10 January 2017 (diff | hist) . . (+41) . . Main Page
- 18:04, 9 January 2017 (diff | hist) . . (0) . . Hardware Issues
- 18:00, 9 January 2017 (diff | hist) . . (+18) . . Hardware Issues
- 16:38, 9 January 2017 (diff | hist) . . (+6) . . Bottlenose dolphin population genomic analysis
- 16:38, 9 January 2017 (diff | hist) . . (+38) . . Bottlenose dolphin population genomic analysis
- 16:37, 9 January 2017 (diff | hist) . . (+209) . . Bottlenose dolphin population genomic analysis
- 16:32, 9 January 2017 (diff | hist) . . (+488) . . Bottlenose dolphin population genomic analysis
- 16:22, 9 January 2017 (diff | hist) . . (+193) . . Bottlenose dolphin population genomic analysis
- 16:11, 9 January 2017 (diff | hist) . . (+370) . . Bottlenose dolphin population genomic analysis
- 15:29, 9 January 2017 (diff | hist) . . (+381) . . Bottlenose dolphin population genomic analysis
- 14:46, 9 January 2017 (diff | hist) . . (+711) . . Samtools
- 14:09, 9 January 2017 (diff | hist) . . (-56) . . Bottlenose dolphin population genomic analysis
- 14:08, 9 January 2017 (diff | hist) . . (+827) . . Bottlenose dolphin population genomic analysis
- 13:55, 9 January 2017 (diff | hist) . . (+2) . . Main Page
- 13:47, 9 January 2017 (diff | hist) . . (0) . . m Bottlenose dolphin population genomic analysis (Rf moved page Subtracting mitochondrial alignment pipeline to Bottlenose dolphin population genomic analysis: better title)
- 13:47, 9 January 2017 (diff | hist) . . (+60) . . N Subtracting mitochondrial alignment pipeline (Rf moved page Subtracting mitochondrial alignment pipeline to Bottlenose dolphin population genomic analysis: better title) (current)
- 13:20, 9 January 2017 (diff | hist) . . (+65) . . Bottlenose dolphin population genomic analysis
- 13:14, 9 January 2017 (diff | hist) . . (+58) . . Bottlenose dolphin population genomic analysis
- 13:12, 9 January 2017 (diff | hist) . . (+435) . . Bottlenose dolphin population genomic analysis
- 12:34, 9 January 2017 (diff | hist) . . (+34) . . SPAdes
- 12:33, 9 January 2017 (diff | hist) . . (-1) . . SPAdes
- 10:05, 4 January 2017 (diff | hist) . . (+355) . . Bottlenose dolphin population genomic analysis
- 01:10, 31 December 2016 (diff | hist) . . (+326) . . Bottlenose dolphin population genomic analysis
- 01:07, 31 December 2016 (diff | hist) . . (+120) . . Bottlenose dolphin population genomic analysis
- 01:04, 31 December 2016 (diff | hist) . . (+443) . . Bottlenose dolphin population genomic analysis
- 00:59, 31 December 2016 (diff | hist) . . (+175) . . Bottlenose dolphin population genomic analysis
- 00:58, 31 December 2016 (diff | hist) . . (-671) . . Bottlenose dolphin population genomic analysis
- 00:57, 31 December 2016 (diff | hist) . . (+1,571) . . Bottlenose dolphin population genomic analysis
- 16:38, 22 December 2016 (diff | hist) . . (+1) . . CallSNPs.py
- 16:21, 22 December 2016 (diff | hist) . . (-49) . . CallSNPs.py
- 16:18, 22 December 2016 (diff | hist) . . (-11) . . CallSNPs.py
- 14:21, 22 December 2016 (diff | hist) . . (+2,588) . . N Cramtools (Created page with "= Introduction = CRAM is a (further) compressed form of a bam file. It's necessary due the high numbers of bam files being generated in NGS. Samtools is able to handle CRAM...") (current)
- 14:09, 22 December 2016 (diff | hist) . . (+16) . . Main Page
- 13:13, 21 December 2016 (diff | hist) . . (+560) . . Python DRMAA (current)
- 12:55, 21 December 2016 (diff | hist) . . (+247) . . Python DRMAA
- 12:53, 21 December 2016 (diff | hist) . . (+19) . . N DRMAA for further Gridengine automation (Created page with "= Introduction = D") (current)
- 12:52, 21 December 2016 (diff | hist) . . (+46) . . Main Page
- 18:14, 19 December 2016 (diff | hist) . . (+328) . . Velvet (current)
- 17:45, 19 December 2016 (diff | hist) . . (+24) . . CallSNPs.py
- 17:42, 19 December 2016 (diff | hist) . . (+2) . . CallSNPs.py
- 16:44, 19 December 2016 (diff | hist) . . (+78) . . CallSNPs.py
- 15:35, 19 December 2016 (diff | hist) . . (+50) . . CallSNPs.py
- 15:28, 19 December 2016 (diff | hist) . . (+1) . . Mega (current)
- 14:09, 19 December 2016 (diff | hist) . . (+200) . . Mega
- 14:05, 19 December 2016 (diff | hist) . . (+254) . . Mega
- 14:04, 19 December 2016 (diff | hist) . . (+216) . . N Mega (Created page with "= Introduction = This program is also called '''megacc''', the "cc" standingfor "Computational Core" A preparatory step is required for the configuration of the analysis, fa...")
- 13:59, 19 December 2016 (diff | hist) . . (+11) . . Main Page
- 13:02, 19 December 2016 (diff | hist) . . (+125) . . CallSNPs.py
- 12:42, 19 December 2016 (diff | hist) . . (+110) . . N Bottlenose dolphin population genomic analysis (Created page with "= Introduction = Used for population genetics studies. = Stages = == Quality trimming == Using trimmomatic")
- 12:19, 19 December 2016 (diff | hist) . . (+51) . . Main Page
- 19:28, 16 December 2016 (diff | hist) . . (+284) . . Hardware Issues
- 19:13, 16 December 2016 (diff | hist) . . (+157) . . Hardware Issues
- 19:08, 16 December 2016 (diff | hist) . . (+169) . . Hardware Issues
- 19:03, 16 December 2016 (diff | hist) . . (+114) . . Hardware Issues
- 19:01, 16 December 2016 (diff | hist) . . (+46) . . N File:Marvdimm.png (mainboard image with DIMM location highlighted) (current)
- 18:41, 16 December 2016 (diff | hist) . . (+7) . . Hardware Issues
- 18:40, 16 December 2016 (diff | hist) . . (+1) . . Hardware Issues
- 18:40, 16 December 2016 (diff | hist) . . (+942) . . Hardware Issues
- 18:17, 16 December 2016 (diff | hist) . . (+130) . . Hardware Issues
- 18:09, 16 December 2016 (diff | hist) . . (+451) . . Hardware Issues
- 18:05, 16 December 2016 (diff | hist) . . (+489) . . Hardware Issues
- 17:46, 16 December 2016 (diff | hist) . . (+214) . . Hardware Issues
- 16:45, 16 December 2016 (diff | hist) . . (+21) . . Hardware Issues
- 16:45, 16 December 2016 (diff | hist) . . (+114) . . Hardware Issues
- 16:39, 16 December 2016 (diff | hist) . . (+147) . . Hardware Issues
- 16:39, 16 December 2016 (diff | hist) . . (+956) . . Hardware Issues (→Repeated memory warnings on marvin front-end)
- 15:56, 16 December 2016 (diff | hist) . . (+197) . . Hardware Issues
- 15:49, 16 December 2016 (diff | hist) . . (+863) . . Hardware Issues
- 15:45, 16 December 2016 (diff | hist) . . (+917) . . Hardware Issues
- 15:42, 16 December 2016 (diff | hist) . . (+917) . . Hardware Issues (→Repeated memory warnings on marvin front-end)
- 12:04, 15 December 2016 (diff | hist) . . (+222) . . Bowtie (current)
- 17:11, 14 December 2016 (diff | hist) . . (+326) . . FASTQC and MultiQC
- 15:50, 14 December 2016 (diff | hist) . . (+14) . . Srst2
- 15:46, 14 December 2016 (diff | hist) . . (+14) . . Srst2
- 15:44, 14 December 2016 (diff | hist) . . (-16) . . Srst2
- 15:43, 14 December 2016 (diff | hist) . . (+542) . . Srst2
- 18:50, 12 December 2016 (diff | hist) . . (+4,367) . . N Repeatmasker (Created page with "= Installation requirements = * variouus Perl modules * trf: Tandem Repeats Finder, only seems necessary for the subprogram '''RepeatProteinMask''' * One of the following: ''...")
- 18:06, 12 December 2016 (diff | hist) . . (+19) . . Main Page
- 16:57, 12 December 2016 (diff | hist) . . (+10) . . Available Software
- 15:05, 9 December 2016 (diff | hist) . . (+1) . . Home directories max-out incident 28.11.2016
- 14:28, 9 December 2016 (diff | hist) . . (+684) . . Home directories max-out incident 28.11.2016
- 11:43, 9 December 2016 (diff | hist) . . (+111) . . Users and Groups
- 14:05, 7 December 2016 (diff | hist) . . (0) . . Available Software
- 14:04, 7 December 2016 (diff | hist) . . (+2,407) . . Available Software
- 12:19, 7 December 2016 (diff | hist) . . (+616) . . General Command-line Tips
- 20:15, 5 December 2016 (diff | hist) . . (+781) . . N Python DRMAA (Created page with "=Introduction= A python interface that uses the DRMAA C-binding API to automate parts of running queue jobs, to make the process a bit more mangeable. It is not terribly sop...")
- 20:07, 5 December 2016 (diff | hist) . . (+19) . . Main Page
- 13:39, 5 December 2016 (diff | hist) . . (+127) . . Samtools
- 13:11, 5 December 2016 (diff | hist) . . (+63) . . Samtools
- 12:03, 5 December 2016 (diff | hist) . . (+3) . . Samtools
- 15:27, 2 December 2016 (diff | hist) . . (+182) . . Bowtie
- 15:00, 2 December 2016 (diff | hist) . . (+269) . . Bedtools
- 14:54, 2 December 2016 (diff | hist) . . (+305) . . Bedtools
- 18:36, 1 December 2016 (diff | hist) . . (+462) . . Samtools
- 17:28, 1 December 2016 (diff | hist) . . (+363) . . Samtools
- 17:19, 1 December 2016 (diff | hist) . . (+69) . . Bedtools
- 17:17, 1 December 2016 (diff | hist) . . (+1,452) . . Bedtools
- 17:21, 30 November 2016 (diff | hist) . . (+1,180) . . Bwa
- 17:15, 30 November 2016 (diff | hist) . . (-10) . . Samtools
- 16:44, 30 November 2016 (diff | hist) . . (+66) . . Samtools
- 16:38, 30 November 2016 (diff | hist) . . (-5) . . CallSNPs.py
- 15:50, 30 November 2016 (diff | hist) . . (+77) . . Bedtools
- 15:50, 30 November 2016 (diff | hist) . . (+100) . . N Bedtools (Created page with "= Introduction = General bioinformatics tool bult by the active Aaron Quinlan at University of Utah")
- 15:34, 30 November 2016 (diff | hist) . . (+15) . . Main Page
- 15:23, 30 November 2016 (diff | hist) . . (+311) . . Bwa
- 15:16, 30 November 2016 (diff | hist) . . (+45) . . Bwa
- 15:12, 30 November 2016 (diff | hist) . . (+459) . . Bwa
- 14:29, 30 November 2016 (diff | hist) . . (+435) . . Samtools
- 14:25, 30 November 2016 (diff | hist) . . (+350) . . Samtools
- 13:54, 30 November 2016 (diff | hist) . . (+1) . . CallSNPs.py
- 13:54, 30 November 2016 (diff | hist) . . (+26) . . CallSNPs.py
- 13:52, 30 November 2016 (diff | hist) . . (+7) . . CallSNPs.py
- 13:09, 30 November 2016 (diff | hist) . . (+2) . . Main Page
- 19:23, 29 November 2016 (diff | hist) . . (+88) . . Home directories max-out incident 28.11.2016
- 18:29, 29 November 2016 (diff | hist) . . (+34) . . Home directories max-out incident 28.11.2016
- 18:28, 29 November 2016 (diff | hist) . . (+520) . . Home directories max-out incident 28.11.2016
- 17:35, 29 November 2016 (diff | hist) . . (+92) . . Home directories max-out incident 28.11.2016
- 17:29, 29 November 2016 (diff | hist) . . (+728) . . Home directories max-out incident 28.11.2016
- 19:51, 28 November 2016 (diff | hist) . . (+471) . . N Home directories max-out incident 28.11.2016 (Created page with "= Introduction = Since the 6TB expansion at the end of June 2016, there has been substantial harddisk space free, for several months it was 15TB, which seemed a little too mu...")
- 16:40, 28 November 2016 (diff | hist) . . (+51) . . Main Page
- 17:28, 25 November 2016 (diff | hist) . . (+230) . . Samtools
- 17:23, 25 November 2016 (diff | hist) . . (+32) . . Samtools
- 17:19, 25 November 2016 (diff | hist) . . (+305) . . Samtools
- 16:19, 25 November 2016 (diff | hist) . . (+405) . . BLAST
- 15:48, 25 November 2016 (diff | hist) . . (+6) . . Hardware Issues
- 15:48, 25 November 2016 (diff | hist) . . (+472) . . Hardware Issues
- 15:29, 25 November 2016 (diff | hist) . . (+365) . . Hardware Issues
- 15:23, 25 November 2016 (diff | hist) . . (+344) . . N Hardware Issues (Created page with "=Introduction= Conditions under which the hardware of the cluster are kept. = Service = * The Supermicro servers were supplied by Viglen, which was bought by, and is now kn...")
- 15:12, 25 November 2016 (diff | hist) . . (+22) . . Main Page
- 19:13, 24 November 2016 (diff | hist) . . (+675) . . N Clustal (Created page with "= Introduction = Clustal was the first aligner that handled multiple sequences, i.e. that went beyond pair-wise alignment. = File format= The alignment is columnised into c...") (current)
- 19:03, 24 November 2016 (diff | hist) . . (+14) . . Main Page
- 18:57, 24 November 2016 (diff | hist) . . (+310) . . T-coffee (current)
- 18:45, 24 November 2016 (diff | hist) . . (+159) . . T-coffee
- 18:26, 24 November 2016 (diff | hist) . . (+2) . . T-coffee
- 18:15, 24 November 2016 (diff | hist) . . (+1,069) . . N T-coffee (Created page with "= Introduction = Multiple sequence aligner ... especially proteins, Cedric Notredame of the CRG in Barcelona. It's quite large program with many options and is capable of in...")
- 17:52, 24 November 2016 (diff | hist) . . (+15) . . Main Page
- 16:41, 24 November 2016 (diff | hist) . . (+574) . . N Backups (Created page with "Jason Cormie of IT Services supplied the following details The volume is raided across 348 disks (mix of SSD,SATA, SAS with 29 being hot spares), and asynchronously mirrored...")
- 16:40, 24 November 2016 (diff | hist) . . (+14) . . Main Page
- 12:09, 24 November 2016 (diff | hist) . . (0) . . BLAST
- 11:24, 24 November 2016 (diff | hist) . . (+378) . . BLAST
- 14:52, 18 November 2016 (diff | hist) . . (+1) . . Samtools
- 14:51, 18 November 2016 (diff | hist) . . (+248) . . Samtools
- 14:48, 18 November 2016 (diff | hist) . . (+97) . . Samtools
- 18:43, 16 November 2016 (diff | hist) . . (-2) . . Sra-tools
- 18:42, 16 November 2016 (diff | hist) . . (-12) . . Sra-tools
- 18:41, 16 November 2016 (diff | hist) . . (+98) . . Sra-tools
- 18:40, 16 November 2016 (diff | hist) . . (+138) . . Sra-tools
- 18:01, 15 November 2016 (diff | hist) . . (+195) . . N Bwa (Created page with "= Introduction = Heng Li's aligner. = Usage = == Indexing == When bwa indexes a reference, it will use the whole filename and generate output index files with extensions a...")
- 17:51, 15 November 2016 (diff | hist) . . (+10) . . Main Page
- 13:43, 15 November 2016 (diff | hist) . . (+46) . . Bowtie
- 13:38, 15 November 2016 (diff | hist) . . (+16) . . Bowtie
- 13:38, 15 November 2016 (diff | hist) . . (+59) . . Bowtie
- 13:36, 15 November 2016 (diff | hist) . . (+78) . . Bowtie
- 13:34, 15 November 2016 (diff | hist) . . (+195) . . Bowtie
- 13:27, 15 November 2016 (diff | hist) . . (+382) . . Bowtie
- 13:06, 15 November 2016 (diff | hist) . . (+27) . . Bowtie
- 13:02, 15 November 2016 (diff | hist) . . (+365) . . Bowtie
- 15:22, 9 November 2016 (diff | hist) . . (+237) . . Samtools
- 14:49, 9 November 2016 (diff | hist) . . (+150) . . Samtools
- 13:47, 9 November 2016 (diff | hist) . . (+135) . . Samtools
- 19:15, 8 November 2016 (diff | hist) . . (+108) . . Samtools
- 17:01, 8 November 2016 (diff | hist) . . (+487) . . N Bowtie (Created page with "= Introduction = This article refers to the early version of bowtie, which in fact has a few features that version 2 does not have, such as colorspace data processing = Inde...")
- 16:40, 8 November 2016 (diff | hist) . . (+13) . . Main Page
- 14:14, 8 November 2016 (diff | hist) . . (+81) . . General Command-line Tips
- 13:45, 8 November 2016 (diff | hist) . . (+206) . . N General Command-line Tips (Created page with "= Introduction= Tips for using the command line = GNU Parallel= To check the md5sums of a number of files according to a md5sum, one mat use this: cat <file_with_md5sums>...")
- 13:43, 8 November 2016 (diff | hist) . . (+32) . . Main Page
- 17:32, 2 November 2016 (diff | hist) . . (-40) . . Users and Groups
- 17:53, 20 October 2016 (diff | hist) . . (+473) . . Samtools
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