Albacore

Introduction

Basecalling software from Oxford Nanopore.

Accessed by loading python/3.6.4

Updating

https://community.nanoporetech.com/protocols/albacore-offline-basecalli/v/abec_2003_v1_revan_29nov2016/run-albacore-on-linux

Get the .whl and run

pip3 install --upgrade ./whl-file.whl

Usage

read_fast5_basecaller.py -i 0 -t 8 -s alb0 -c FLO-MIN106_RAD002_linear.cfg -b