User contributions
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- 12:33, 10 May 2017 (diff | hist) . . (+757) . . Quality Control and Preprocessing Talk (current)
- 12:13, 10 May 2017 (diff | hist) . . (0) . . N File:Fqhead.png (current)
- 11:26, 10 May 2017 (diff | hist) . . (+90) . . Intro to RNA-Seq Data Analysis Course
- 11:23, 10 May 2017 (diff | hist) . . (+669) . . Intro to RNA-Seq Data Analysis Course
- 11:02, 10 May 2017 (diff | hist) . . (+628) . . Key Aspects of R Exercise
- 00:15, 10 May 2017 (diff | hist) . . (+64) . . Differential Expression Exercise
- 00:02, 10 May 2017 (diff | hist) . . (+475) . . Differential Expression Exercise
- 00:01, 10 May 2017 (diff | hist) . . (-1,454) . . Key Aspects of R Exercise
- 23:52, 9 May 2017 (diff | hist) . . (+504) . . I2rda Course Cheatsheet
- 23:16, 9 May 2017 (diff | hist) . . (+786) . . Differential Expression Exercise
- 22:32, 9 May 2017 (diff | hist) . . (+217) . . Trinity Protocol (current)
- 22:29, 9 May 2017 (diff | hist) . . (-434) . . Trinity Protocol (n)
- 18:09, 9 May 2017 (diff | hist) . . (+23) . . m Differential Expression Talk (current)
- 18:05, 9 May 2017 (diff | hist) . . (-280) . . Differential Expression Talk
- 18:05, 9 May 2017 (diff | hist) . . (0) . . N File:Twoma.png (Uploaded with SimpleBatchUpload) (current)
- 18:03, 9 May 2017 (diff | hist) . . (0) . . N File:Pval.png (Uploaded with SimpleBatchUpload) (current)
- 18:03, 9 May 2017 (diff | hist) . . (0) . . N File:Pvalfdr.png (Uploaded with SimpleBatchUpload) (current)
- 17:36, 9 May 2017 (diff | hist) . . (-360) . . Differential Expression Talk
- 17:28, 9 May 2017 (diff | hist) . . (-553) . . Differential Expression Talk
- 17:27, 9 May 2017 (diff | hist) . . (0) . . N File:Groupcomp.png (Uploaded with SimpleBatchUpload) (current)
- 17:27, 9 May 2017 (diff | hist) . . (0) . . N File:Expdes.png (Uploaded with SimpleBatchUpload) (current)
- 17:27, 9 May 2017 (diff | hist) . . (0) . . N File:Matchcomp.png (Uploaded with SimpleBatchUpload) (current)
- 16:40, 9 May 2017 (diff | hist) . . (0) . . Differential Expression Talk
- 16:27, 9 May 2017 (diff | hist) . . (+434) . . Differential Expression Talk
- 16:09, 9 May 2017 (diff | hist) . . (+347) . . Differential Expression Talk
- 16:03, 9 May 2017 (diff | hist) . . (0) . . N File:Normcount1.png (Uploaded with SimpleBatchUpload) (current)
- 16:03, 9 May 2017 (diff | hist) . . (0) . . N File:Normcount2.png (Uploaded with SimpleBatchUpload) (current)
- 16:00, 9 May 2017 (diff | hist) . . (-1,099) . . Differential Expression Talk (n)
- 15:25, 9 May 2017 (diff | hist) . . (+1,302) . . N Maximum Likelihood (Created page with "= Introduction = This is a very widely used mathematical (probabilistic) approach used when trying to build a model from real-world observations. A key aspect of the approac...") (current)
- 15:11, 9 May 2017 (diff | hist) . . (+25) . . Main Page
- 15:00, 9 May 2017 (diff | hist) . . (0) . . N File:Dillies.png (Uploaded with SimpleBatchUpload) (current)
- 14:52, 9 May 2017 (diff | hist) . . (0) . . N File:Bcv1.png (Uploaded with SimpleBatchUpload) (current)
- 14:52, 9 May 2017 (diff | hist) . . (0) . . N File:Norm1.png (Uploaded with SimpleBatchUpload) (current)
- 14:52, 9 May 2017 (diff | hist) . . (0) . . N File:Twosmear.png (Uploaded with SimpleBatchUpload) (current)
- 14:52, 9 May 2017 (diff | hist) . . (0) . . N File:Twof.png (Uploaded with SimpleBatchUpload) (current)
- 14:52, 9 May 2017 (diff | hist) . . (0) . . N File:Norm2.png (Uploaded with SimpleBatchUpload) (current)
- 14:52, 9 May 2017 (diff | hist) . . (0) . . N File:Singg3.png (Uploaded with SimpleBatchUpload) (current)
- 14:52, 9 May 2017 (diff | hist) . . (0) . . N File:Outp.png (Uploaded with SimpleBatchUpload) (current)
- 14:52, 9 May 2017 (diff | hist) . . (0) . . N File:Test100.png (Uploaded with SimpleBatchUpload) (current)
- 14:52, 9 May 2017 (diff | hist) . . (0) . . N File:Singg2.png (Uploaded with SimpleBatchUpload) (current)
- 14:52, 9 May 2017 (diff | hist) . . (0) . . N File:Singg1.png (Uploaded with SimpleBatchUpload) (current)
- 14:52, 9 May 2017 (diff | hist) . . (0) . . N File:Mda5.png (Uploaded with SimpleBatchUpload) (current)
- 14:52, 9 May 2017 (diff | hist) . . (0) . . N File:Mda3.png (Uploaded with SimpleBatchUpload) (current)
- 14:52, 9 May 2017 (diff | hist) . . (0) . . N File:Mda4.png (Uploaded with SimpleBatchUpload) (current)
- 14:52, 9 May 2017 (diff | hist) . . (0) . . N File:Mda2.png (Uploaded with SimpleBatchUpload) (current)
- 14:52, 9 May 2017 (diff | hist) . . (0) . . N File:Mda1.png (Uploaded with SimpleBatchUpload) (current)
- 14:35, 9 May 2017 (diff | hist) . . (0) . . N File:Minpath.png (Uploaded with SimpleBatchUpload) (current)
- 14:35, 9 May 2017 (diff | hist) . . (0) . . N File:Isolik.png (Uploaded with SimpleBatchUpload) (current)
- 14:34, 9 May 2017 (diff | hist) . . (-409) . . Estimating Gene Count Talk (current)
- 14:21, 9 May 2017 (diff | hist) . . (-37) . . Estimating Gene Count Talk
- 14:18, 9 May 2017 (diff | hist) . . (0) . . File:Htseq.png (Rf uploaded a new version of File:Htseq.png) (current)
- 14:18, 9 May 2017 (diff | hist) . . (0) . . N File:Htcats.png (Uploaded with SimpleBatchUpload) (current)
- 14:14, 9 May 2017 (diff | hist) . . (-401) . . Estimating Gene Count Talk
- 14:13, 9 May 2017 (diff | hist) . . (0) . . N File:Htseq.png (Uploaded with SimpleBatchUpload)
- 14:13, 9 May 2017 (diff | hist) . . (0) . . N File:Htcats.png.png (Uploaded with SimpleBatchUpload) (current)
- 14:13, 9 May 2017 (diff | hist) . . (0) . . N File:T1t2t3aggreg.png (Uploaded with SimpleBatchUpload) (current)
- 14:13, 9 May 2017 (diff | hist) . . (0) . . N File:T1t2t3.png (Uploaded with SimpleBatchUpload) (current)
- 14:13, 9 May 2017 (diff | hist) . . (0) . . N File:Unsolved.png (Uploaded with SimpleBatchUpload) (current)
- 14:13, 9 May 2017 (diff | hist) . . (0) . . N File:T1t2aggreg.png (Uploaded with SimpleBatchUpload) (current)
- 14:13, 9 May 2017 (diff | hist) . . (0) . . N File:T1.png (Uploaded with SimpleBatchUpload) (current)
- 14:13, 9 May 2017 (diff | hist) . . (0) . . N File:T1t2.png (Uploaded with SimpleBatchUpload) (current)
- 13:33, 9 May 2017 (diff | hist) . . (+2,175) . . N Estimating Gene Count Talk (Created page with "Estimating gene count = Estimating Gene Count = How many reads are overlapping genomic features? - or - Can we confidently assign each read to a feature/transcript/gene? Not...")
- 13:22, 9 May 2017 (diff | hist) . . (-13) . . Quality of Mapping Talk (current)
- 13:20, 9 May 2017 (diff | hist) . . (-17) . . Quality of Mapping Talk
- 13:20, 9 May 2017 (diff | hist) . . (+17) . . Quality of Mapping Talk
- 13:15, 9 May 2017 (diff | hist) . . (+1,328) . . N Quality of Mapping Talk (Created page with "= Mapping quality control = Some issues are only detectable in the context of the genome: * Duplicate reads * Fragment size distribution * Gene coverage * Completeness of data...")
- 12:49, 9 May 2017 (diff | hist) . . (0) . . N File:Gcov.png (Uploaded with SimpleBatchUpload) (current)
- 12:49, 9 May 2017 (diff | hist) . . (0) . . N File:Inssz.png (Uploaded with SimpleBatchUpload) (current)
- 12:49, 9 May 2017 (diff | hist) . . (0) . . N File:Comp.png (Uploaded with SimpleBatchUpload) (current)
- 12:49, 9 May 2017 (diff | hist) . . (0) . . N File:Dups.png (Uploaded with SimpleBatchUpload) (current)
- 12:33, 9 May 2017 (diff | hist) . . (+58) . . Quality Control and Preprocessing Exercise
- 12:31, 9 May 2017 (diff | hist) . . (+129) . . Quality Control and Preprocessing Exercise
- 11:39, 9 May 2017 (diff | hist) . . (0) . . File:Biorpaper.png (Rf uploaded a new version of File:Biorpaper.png) (current)
- 11:39, 9 May 2017 (diff | hist) . . (0) . . File:Rnasoc.png (Rf uploaded a new version of File:Rnasoc.png) (current)
- 11:28, 9 May 2017 (diff | hist) . . (0) . . N File:Igvlayout.png (Uploaded with SimpleBatchUpload) (current)
- 11:28, 9 May 2017 (diff | hist) . . (0) . . N File:Rnasoc.png (Uploaded with SimpleBatchUpload)
- 11:28, 9 May 2017 (diff | hist) . . (0) . . N File:Biorpaper.png (Uploaded with SimpleBatchUpload)
- 11:27, 9 May 2017 (diff | hist) . . (+189) . . RNASeq library preparation (current)
- 11:11, 9 May 2017 (diff | hist) . . (+55) . . Visualisation of mapped reads
- 10:32, 9 May 2017 (diff | hist) . . (-3) . . RNASeq library preparation
- 10:24, 9 May 2017 (diff | hist) . . (0) . . N File:Dan.png (Uploaded with SimpleBatchUpload) (current)
- 10:24, 9 May 2017 (diff | hist) . . (0) . . N File:Illu.png (Uploaded with SimpleBatchUpload) (current)
- 10:24, 9 May 2017 (diff | hist) . . (0) . . N File:Illu2.png (Uploaded with SimpleBatchUpload) (current)
- 10:24, 9 May 2017 (diff | hist) . . (0) . . N File:Totalrna.png (Uploaded with SimpleBatchUpload) (current)
- 10:24, 9 May 2017 (diff | hist) . . (0) . . N File:Illu5.png (Uploaded with SimpleBatchUpload) (current)
- 10:24, 9 May 2017 (diff | hist) . . (0) . . N File:Rnawf.png (Uploaded with SimpleBatchUpload) (current)
- 10:24, 9 May 2017 (diff | hist) . . (0) . . N File:Illu4.png (Uploaded with SimpleBatchUpload) (current)
- 10:24, 9 May 2017 (diff | hist) . . (0) . . N File:Illu3.png (Uploaded with SimpleBatchUpload) (current)
- 10:23, 9 May 2017 (diff | hist) . . (+787) . . N RNASeq library preparation (Created page with "= Total RNA = File:totalrna.png = mRNA-seq workflow = File:rnawf.png = Illumina NGS Library = File:illu.png = Illumina library read binding 1= File:illu2....")
- 00:19, 9 May 2017 (diff | hist) . . (+13) . . Mapping to Reference Talk (current)
- 00:16, 9 May 2017 (diff | hist) . . (-507) . . Mapping to Reference Talk
- 00:13, 9 May 2017 (diff | hist) . . (0) . . N File:Optags2.png (Uploaded with SimpleBatchUpload) (current)
- 00:13, 9 May 2017 (diff | hist) . . (0) . . N File:Optags1.png (Uploaded with SimpleBatchUpload) (current)
- 00:12, 9 May 2017 (diff | hist) . . (0) . . N File:Alignsec.png (Uploaded with SimpleBatchUpload) (current)
- 00:12, 9 May 2017 (diff | hist) . . (0) . . N File:Sam2panel.png (Uploaded with SimpleBatchUpload) (current)
- 00:12, 9 May 2017 (diff | hist) . . (0) . . N File:Headersec.png (Uploaded with SimpleBatchUpload) (current)
- 00:12, 9 May 2017 (diff | hist) . . (0) . . N File:Cigarex.png (Uploaded with SimpleBatchUpload) (current)
- 00:12, 9 May 2017 (diff | hist) . . (0) . . N File:Flag.png (Uploaded with SimpleBatchUpload) (current)
- 00:12, 9 May 2017 (diff | hist) . . (0) . . N File:Cigar.png (Uploaded with SimpleBatchUpload) (current)
- 23:31, 8 May 2017 (diff | hist) . . (0) . . N File:Hist.png (Uploaded with SimpleBatchUpload) (current)
- 23:31, 8 May 2017 (diff | hist) . . (0) . . N File:Mappers.png (Uploaded with SimpleBatchUpload) (current)
- 23:31, 8 May 2017 (diff | hist) . . (0) . . N File:Vital.png (Uploaded with SimpleBatchUpload) (current)
- 23:31, 8 May 2017 (diff | hist) . . (0) . . N File:Mapproc.png (Uploaded with SimpleBatchUpload) (current)
- 23:30, 8 May 2017 (diff | hist) . . (-374) . . Mapping to Reference Talk
- 23:18, 8 May 2017 (diff | hist) . . (+6) . . Quality Control and Preprocessing Talk
- 23:16, 8 May 2017 (diff | hist) . . (0) . . N File:Sdl3.png (Uploaded with SimpleBatchUpload) (current)
- 23:16, 8 May 2017 (diff | hist) . . (0) . . File:Sf1.png (Rf uploaded a new version of File:Sf1.png) (current)
- 23:14, 8 May 2017 (diff | hist) . . (0) . . File:Psnc3.png (Rf uploaded a new version of File:Psnc3.png) (current)
- 23:08, 8 May 2017 (diff | hist) . . (0) . . N File:Sf1.png (Uploaded with SimpleBatchUpload)
- 23:06, 8 May 2017 (diff | hist) . . (0) . . N File:Ptsq4.png (Uploaded with SimpleBatchUpload) (current)
- 23:06, 8 May 2017 (diff | hist) . . (0) . . N File:Bimods.png (Uploaded with SimpleBatchUpload) (current)
- 23:06, 8 May 2017 (diff | hist) . . (0) . . N File:Ptsq3.png (Uploaded with SimpleBatchUpload) (current)
- 23:05, 8 May 2017 (diff | hist) . . (0) . . N File:Gff.png (Uploaded with SimpleBatchUpload) (current)
- 23:04, 8 May 2017 (diff | hist) . . (0) . . N File:Psnc3.png (Uploaded with SimpleBatchUpload)
- 23:04, 8 May 2017 (diff | hist) . . (0) . . N File:Pbgcc3.png (Uploaded with SimpleBatchUpload) (current)
- 23:04, 8 May 2017 (diff | hist) . . (0) . . N File:Ovrep3.png (Uploaded with SimpleBatchUpload) (current)
- 23:03, 8 May 2017 (diff | hist) . . (0) . . N File:Pbsqb3.png (Uploaded with SimpleBatchUpload) (current)
- 23:03, 8 May 2017 (diff | hist) . . (0) . . N File:Pbsc3.png (Uploaded with SimpleBatchUpload) (current)
- 23:03, 8 May 2017 (diff | hist) . . (0) . . N File:Psgcc3.png (Uploaded with SimpleBatchUpload) (current)
- 23:03, 8 May 2017 (diff | hist) . . (0) . . File:Pbsqb4.png (Rf uploaded a new version of File:Pbsqb4.png) (current)
- 23:02, 8 May 2017 (diff | hist) . . (-2,891) . . Quality Control and Preprocessing Talk
- 22:28, 8 May 2017 (diff | hist) . . (+1) . . Visualisation of mapped reads
- 21:45, 8 May 2017 (diff | hist) . . (+665) . . I2rda Course Cheatsheet
- 21:25, 8 May 2017 (diff | hist) . . (+53) . . Visualisation of mapped reads
- 21:23, 8 May 2017 (diff | hist) . . (-61) . . Visualisation of mapped reads
- 19:38, 8 May 2017 (diff | hist) . . (+144) . . Visualisation of mapped reads
- 19:34, 8 May 2017 (diff | hist) . . (+3,569) . . N Visualisation of mapped reads (Created page with "= Introduction = In contrast to the other more quantitative stages, this exercise is qualitative in the sense that we get a visual feel for a certain area of interest. = Aim...")
- 19:24, 8 May 2017 (diff | hist) . . (+1) . . Quality of Mapping Exercise
- 19:17, 8 May 2017 (diff | hist) . . (+830) . . Quality of Mapping Exercise
- 18:43, 8 May 2017 (diff | hist) . . (+52) . . I2rda Course Cheatsheet
- 18:37, 8 May 2017 (diff | hist) . . (+423) . . I2rda Course Cheatsheet
- 16:02, 8 May 2017 (diff | hist) . . (+204) . . Quality Control and Preprocessing Exercise
- 12:19, 8 May 2017 (diff | hist) . . (0) . . Quality Control and Preprocessing Talk
- 12:18, 8 May 2017 (diff | hist) . . (-1) . . Quality Control and Preprocessing Talk
- 12:17, 8 May 2017 (diff | hist) . . (-28) . . Quality Control and Preprocessing Talk
- 12:17, 8 May 2017 (diff | hist) . . (+1) . . Quality Control and Preprocessing Talk
- 12:15, 8 May 2017 (diff | hist) . . (0) . . Quality Control and Preprocessing Talk
- 12:14, 8 May 2017 (diff | hist) . . (+29) . . Quality Control and Preprocessing Talk
- 12:13, 8 May 2017 (diff | hist) . . (-1) . . Quality Control and Preprocessing Talk
- 12:09, 8 May 2017 (diff | hist) . . (+142) . . Quality Control and Preprocessing Talk
- 12:06, 8 May 2017 (diff | hist) . . (+131) . . Quality Control and Preprocessing Talk
- 12:05, 8 May 2017 (diff | hist) . . (0) . . N File:Pbsqb4.png
- 11:54, 8 May 2017 (diff | hist) . . (0) . . N File:Multiqc.png (current)
- 01:41, 8 May 2017 (diff | hist) . . (0) . . N File:Ngsqc.png (Uploaded with SimpleBatchUpload) (current)
- 01:41, 8 May 2017 (diff | hist) . . (0) . . N File:Fastqc.png (Uploaded with SimpleBatchUpload) (current)
- 01:41, 8 May 2017 (diff | hist) . . (0) . . N File:Fastx.png (Uploaded with SimpleBatchUpload) (current)
- 01:41, 8 May 2017 (diff | hist) . . (0) . . N File:Fformat.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Ptsq2.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Ptsq.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Sf.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Sf2.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Psqs.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Psnc.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Sdl.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Psgcc.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Sascha.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Ovrep.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Pbsc.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Pbsqb.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Pbgcc.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Pbsqg.png (Uploaded with SimpleBatchUpload) (current)
- 01:30, 8 May 2017 (diff | hist) . . (0) . . N File:Ascii.png (current)
- 01:28, 8 May 2017 (diff | hist) . . (+6,858) . . N Quality Control and Preprocessing Talk (Created page with "Quality control and data pre-processing = Contents = * Data formats : – Fasta and Fastq formats : – Sequence quality encoding * Quality Control (QC) :– Evaluation of s...")
- 01:27, 8 May 2017 (diff | hist) . . (+6,858) . . N Quality Control Preprocessing Talk (Created page with "Quality control and data pre-processing = Contents = * Data formats : – Fasta and Fastq formats : – Sequence quality encoding * Quality Control (QC) :– Evaluation of s...") (current)
- 01:27, 8 May 2017 (diff | hist) . . (+6,858) . . N Quality and Control Preprocessing Talk (Created page with "Quality control and data pre-processing = Contents = * Data formats : – Fasta and Fastq formats : – Sequence quality encoding * Quality Control (QC) :– Evaluation of s...") (current)
- 01:16, 8 May 2017 (diff | hist) . . (+27) . . Quality of Mapping Exercise
- 21:22, 7 May 2017 (diff | hist) . . (-1) . . I2rda Course Cheatsheet
- 19:34, 7 May 2017 (diff | hist) . . (+398) . . I2rda Course Cheatsheet
- 19:26, 7 May 2017 (diff | hist) . . (-16) . . Quality of Mapping Exercise
- 19:23, 7 May 2017 (diff | hist) . . (0) . . Quality of Mapping Exercise
- 19:15, 7 May 2017 (diff | hist) . . (0) . . Quality of Mapping Exercise
- 19:14, 7 May 2017 (diff | hist) . . (+312) . . Quality of Mapping Exercise
- 19:13, 7 May 2017 (diff | hist) . . (+92) . . I2rda Course Cheatsheet
- 19:12, 7 May 2017 (diff | hist) . . (+164) . . I2rda Course Cheatsheet
- 19:10, 7 May 2017 (diff | hist) . . (+39) . . I2rda Course Cheatsheet
- 19:09, 7 May 2017 (diff | hist) . . (-1) . . I2rda Course Cheatsheet
- 19:08, 7 May 2017 (diff | hist) . . (+462) . . I2rda Course Cheatsheet
- 19:05, 7 May 2017 (diff | hist) . . (-1) . . I2rda Course Cheatsheet
- 19:04, 7 May 2017 (diff | hist) . . (+33) . . I2rda Course Cheatsheet
- 19:02, 7 May 2017 (diff | hist) . . (-1,673) . . I2rda Course Cheatsheet
- 18:56, 7 May 2017 (diff | hist) . . (+213) . . I2rda Course Cheatsheet
- 18:54, 7 May 2017 (diff | hist) . . (-16,925) . . I2rda Course Cheatsheet
- 18:44, 7 May 2017 (diff | hist) . . (+23,298) . . N I2rda Course Cheatsheet (Created page with "= The Command-line (shell) = The real power of Linux/Unix systems is the command line. * Many programs and facilities are available through graphical options on Linux, but a...")
- 18:26, 7 May 2017 (diff | hist) . . (+447) . . Quality of Mapping Exercise
- 18:21, 7 May 2017 (diff | hist) . . (0) . . m Quality of Mapping Exercise (Rf moved page Quality of Mapping to Quality of Mapping Exercise)
- 18:21, 7 May 2017 (diff | hist) . . (+41) . . N Quality of Mapping (Rf moved page Quality of Mapping to Quality of Mapping Exercise) (current)
- 18:10, 7 May 2017 (diff | hist) . . (+370) . . Intro to RNA-Seq Data Analysis Course
- 17:51, 7 May 2017 (diff | hist) . . (+27) . . Tophat (current)
- 17:49, 7 May 2017 (diff | hist) . . (+17) . . Main Page
- 17:47, 7 May 2017 (diff | hist) . . (+947) . . Tophat
- 17:35, 7 May 2017 (diff | hist) . . (+372) . . N Tophat (Created page with "Introduction = The well known sloice-aware aligner or mapper, now being phased out in favour of HISAT2 = Usage = module load tophat This will load the latest version (2.1...")
- 17:21, 7 May 2017 (diff | hist) . . (+41) . . Mapping to Reference Exercise
- 17:18, 7 May 2017 (diff | hist) . . (+2,370) . . Mapping to Reference Exercise
- 15:52, 7 May 2017 (diff | hist) . . (+99) . . Mapping to Reference Exercise
- 15:52, 7 May 2017 (diff | hist) . . (+2,460) . . Mapping to Reference (current)
- 15:13, 7 May 2017 (diff | hist) . . (+165) . . Intro to RNA-Seq Data Analysis Course
- 14:16, 7 May 2017 (diff | hist) . . (+84) . . Intro to RNA-Seq Data Analysis Course
- 14:12, 7 May 2017 (diff | hist) . . (+10) . . Intro to RNA-Seq Data Analysis Course
- 14:11, 7 May 2017 (diff | hist) . . (+304) . . Intro to RNA-Seq Data Analysis Course
- 14:07, 7 May 2017 (diff | hist) . . (-894) . . Intro to RNA-Seq Data Analysis Course
- 13:43, 7 May 2017 (diff | hist) . . (+2,891) . . Intro to RNA-Seq Data Analysis Course
- 13:22, 7 May 2017 (diff | hist) . . (+4,181) . . N Mapping to Reference Talk (Created page with "Mapping to a reference genome = Contents = * Overview * Mapping process: Algorithms and tools * Mapping output: SAM/BAM specification Mapping to a reference genome U Trived...")
- 19:52, 6 May 2017 (diff | hist) . . (+32) . . N I2rda mqx (Rf moved page I2rda mqx to Quality of Mapping) (current)
- 19:52, 6 May 2017 (diff | hist) . . (0) . . m Quality of Mapping Exercise (Rf moved page I2rda mqx to Quality of Mapping)
- 16:48, 6 May 2017 (diff | hist) . . (+6) . . Mapping to Reference Exercise
- 16:40, 6 May 2017 (diff | hist) . . (-54) . . Mapping to Reference Exercise
- 16:17, 6 May 2017 (diff | hist) . . (+2,433) . . N Mapping to Reference Exercise (Created page with "= Aims = Mapping to a reference genome is a vital step to generate counts and do differential gene expression thereafter. For RNA-Seq data it is important to choose an aligne...")
- 16:35, 5 May 2017 (diff | hist) . . (+96) . . m Quality Control and Preprocessing Exercise
- 16:33, 5 May 2017 (diff | hist) . . (+36) . . Quality Control and Preprocessing Exercise
- 15:05, 5 May 2017 (diff | hist) . . (+400) . . Quality Control and Preprocessing Exercise
- 14:30, 5 May 2017 (diff | hist) . . (+287) . . Quality Control and Preprocessing Exercise
- 14:25, 5 May 2017 (diff | hist) . . (+1) . . Ea-utils (current)
- 14:23, 5 May 2017 (diff | hist) . . (+681) . . Ea-utils
- 13:36, 5 May 2017 (diff | hist) . . (+4,220) . . N Ea-utils (Created page with "= Usage of Cluster= * Cluster Manual * Why a Queue Manager? * Available Software = Documented Programs = The following can be seen as extra notes referring to th...")
- 13:35, 5 May 2017 (diff | hist) . . (+16) . . Main Page
- 12:48, 5 May 2017 (diff | hist) . . (-165) . . Quality Control and Preprocessing Exercise
- 09:47, 5 May 2017 (diff | hist) . . (+7,908) . . N Differential Expression Talk (Created page with "07 Differential expression analysis = Goals = Three overall: Primarily, it's about: * Identify differentially expressed genes in two or more conditions (e.g. normal v cance...")
- 15:42, 4 May 2017 (diff | hist) . . (+1,013) . . Key Aspects of R Exercise
- 15:22, 4 May 2017 (diff | hist) . . (0) . . m Key Aspects of R Exercise (Rf moved page Key Aspects of R to Key Aspects of R Exercise)
- 15:22, 4 May 2017 (diff | hist) . . (+39) . . N Key Aspects of R (Rf moved page Key Aspects of R to Key Aspects of R Exercise) (current)
- 15:22, 4 May 2017 (diff | hist) . . (0) . . m Key Aspects of R Exercise (Rf moved page I2rda karx to Key Aspects of R)
- 15:22, 4 May 2017 (diff | hist) . . (+30) . . N I2rda karx (Rf moved page I2rda karx to Key Aspects of R) (current)
- 15:12, 4 May 2017 (diff | hist) . . (+551) . . Differential Expression Exercise
- 14:48, 4 May 2017 (diff | hist) . . (+521) . . Differential Expression Exercise
- 14:40, 4 May 2017 (diff | hist) . . (0) . . m Estimating Gene Count Exercise (Rf moved page I2rda egcx to Estimating Gene Count Exercise over redirect)
- 14:40, 4 May 2017 (diff | hist) . . (+44) . . N I2rda egcx (Rf moved page I2rda egcx to Estimating Gene Count Exercise over redirect) (current)
- 14:40, 4 May 2017 (diff | hist) . . (0) . . m Functional Analysis Exercise (Rf moved page I2rda fax to Functional Analysis Exercise over redirect)
- 14:40, 4 May 2017 (diff | hist) . . (+42) . . N I2rda fax (Rf moved page I2rda fax to Functional Analysis Exercise over redirect) (current)
- 14:24, 4 May 2017 (diff | hist) . . (+76) . . N Intro to RNA-Seq Data Analysis Course (Created page with "= Organizations Details = = Layout of the Day = = Access to the Machines =")
- 14:12, 4 May 2017 (diff | hist) . . (0) . . m Differential Expression Exercise (Rf moved page I2rda dex to Differential Expression Exercise over redirect)
- 14:12, 4 May 2017 (diff | hist) . . (+46) . . N I2rda dex (Rf moved page I2rda dex to Differential Expression Exercise over redirect) (current)
- 14:00, 4 May 2017 (diff | hist) . . (0) . . m Quality Control and Preprocessing Exercise (Rf moved page Quality Control and Processing Exercise to Quality Control and Preprocessing Exercise)
- 14:00, 4 May 2017 (diff | hist) . . (+56) . . N Quality Control and Processing Exercise (Rf moved page Quality Control and Processing Exercise to Quality Control and Preprocessing Exercise) (current)
- 13:59, 4 May 2017 (diff | hist) . . (0) . . m Quality Control and Preprocessing Exercise (Rf moved page Quality Control and Processing Talk to Quality Control and Processing Exercise)
- 13:59, 4 May 2017 (diff | hist) . . (+53) . . N Quality Control and Processing Talk (Rf moved page Quality Control and Processing Talk to Quality Control and Processing Exercise) (current)
- 13:58, 4 May 2017 (diff | hist) . . (0) . . m Quality Control and Preprocessing Exercise (Rf moved page Qcpx to Quality Control and Processing Talk)
- 13:58, 4 May 2017 (diff | hist) . . (+49) . . N Qcpx (Rf moved page Qcpx to Quality Control and Processing Talk) (current)
- 13:56, 4 May 2017 (diff | hist) . . (0) . . m Functional Analysis Exercise (Rf moved page Functional Analysis Exercise to I2rda fax)
- 13:55, 4 May 2017 (diff | hist) . . (0) . . m Differential Expression Exercise (Rf moved page Differential Expression Exercise to I2rda dex)
- 13:54, 4 May 2017 (diff | hist) . . (0) . . m Estimating Gene Count Exercise (Rf moved page Estimating Gene Count Exercise to I2rda egcx)
- 13:53, 4 May 2017 (diff | hist) . . (0) . . m Quality Control and Preprocessing Exercise (Rf moved page Quality Control and Preprocessing to Qcpx)
- 13:53, 4 May 2017 (diff | hist) . . (+18) . . N Quality Control and Preprocessing (Rf moved page Quality Control and Preprocessing to Qcpx) (current)
- 13:52, 4 May 2017 (diff | hist) . . (0) . . m I2rda m2rx (Rf moved page Mapping to Reference to I2rda m2rx) (current)
- 13:52, 4 May 2017 (diff | hist) . . (+24) . . N Mapping to Reference (Rf moved page Mapping to Reference to I2rda m2rx)
- 13:52, 4 May 2017 (diff | hist) . . (0) . . m Quality of Mapping Exercise (Rf moved page Mapping Quality Exercise to I2rda mqx)
- 13:52, 4 May 2017 (diff | hist) . . (+23) . . N Mapping Quality Exercise (Rf moved page Mapping Quality Exercise to I2rda mqx) (current)
- 13:51, 4 May 2017 (diff | hist) . . (0) . . m Key Aspects of R Exercise (Rf moved page Key Aspects of using R to I2rda karx)
- 13:51, 4 May 2017 (diff | hist) . . (+24) . . N Key Aspects of using R (Rf moved page Key Aspects of using R to I2rda karx) (current)
- 13:13, 2 May 2017 (diff | hist) . . (+4) . . I2rdalinks (current)
- 13:11, 2 May 2017 (diff | hist) . . (+453) . . N I2rdalinks (Created page with "= Introduction = One day is a very short time to deal with such a big topic as RNA-Seq Data Analysis, so this is page of links which attendees can view later in order to supp...")
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