User contributions
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- 13:08, 5 October 2017 (diff | hist) . . (+398) . . Perl
- 12:19, 5 October 2017 (diff | hist) . . (+369) . . ViennaRNA
- 12:17, 5 October 2017 (diff | hist) . . (0) . . Perl
- 12:16, 5 October 2017 (diff | hist) . . (+94) . . Perl
- 12:08, 5 October 2017 (diff | hist) . . (+417) . . N Perl (Created page with "= Introduction = Quite a large software package for dealing with RNA and RNA structure = Installation = New versions of perl follow this configuraion before compiling sh...")
- 12:03, 5 October 2017 (diff | hist) . . (+210) . . N ViennaRNA (Created page with "= Introduction = Quite a large software package for dealing with RNA and RNA structure = Installation = ViennaRNA has a perl interface as well as a python interface for bot...")
- 11:53, 5 October 2017 (diff | hist) . . (+32) . . Main Page
- 14:26, 4 October 2017 (diff | hist) . . (+314) . . MicroRNAs
- 14:14, 4 October 2017 (diff | hist) . . (+203) . . N MicroRNAs (Created page with "= Introduction = = Relevant Papers = == "Predicting effective microRNA target sites in mammalian mRNAs" == By Agarwal et al eLife 2015 , link [https://www.ncbi.nlm.nih.gov/p...")
- 14:09, 4 October 2017 (diff | hist) . . (+16) . . Main Page
- 17:30, 3 October 2017 (diff | hist) . . (+79) . . Banjo
- 17:23, 3 October 2017 (diff | hist) . . (+588) . . N Banjo (Created page with "= Introduction = Banjo is Bayesian Network software with a very range of applicability in terms of data sets. It is coded in java and can be activiated on the cluster with...")
- 17:18, 3 October 2017 (diff | hist) . . (+13) . . Main Page
- 10:11, 2 October 2017 (diff | hist) . . (+2,473) . . N ChIP-Seq Top2 in Yeast 12.09.2017 (Created page with "= Introduction = September 2017 sequencing of a series of datasets listed below = Raw dataset listing = * 2017_09_12_24_INP-56915985 2017-09-12-24-INP_S24_L001_R1_001.fast...")
- 10:08, 2 October 2017 (diff | hist) . . (+40) . . Main Page
- 09:52, 29 September 2017 (diff | hist) . . (-4) . . IGSR/1000 Genomes (current)
- 09:51, 29 September 2017 (diff | hist) . . (+336) . . IGSR/1000 Genomes
- 09:48, 29 September 2017 (diff | hist) . . (+122) . . N IGSR/1000 Genomes (Created page with "= Introduction = IGSR, the Internation Genome Sample Resource provides ongoing support for the 1000 Genomes Project data.")
- 09:46, 29 September 2017 (diff | hist) . . (+24) . . Main Page
- 13:52, 21 September 2017 (diff | hist) . . (+215) . . Roary (current)
- 18:00, 20 September 2017 (diff | hist) . . (-2) . . SCAN-pc laptop
- 17:59, 20 September 2017 (diff | hist) . . (+46) . . SCAN-pc laptop
- 17:59, 20 September 2017 (diff | hist) . . (+184) . . SCAN-pc laptop
- 17:57, 20 September 2017 (diff | hist) . . (+300) . . Incorrect rebooting of marvin 19.09.2017 (current)
- 14:38, 20 September 2017 (diff | hist) . . (+288) . . Incorrect rebooting of marvin 19.09.2017
- 14:35, 20 September 2017 (diff | hist) . . (+1,418) . . N Incorrect rebooting of marvin 19.09.2017 (Created page with "= Introduction = Following a much delayed maintenance period for marvin, the latest published update from RedHat on the 10 Sept 2017 (i.e. kernel 2.6.32-696.10.2.el6.x86_64)...")
- 13:49, 20 September 2017 (diff | hist) . . (+47) . . Main Page
- 16:12, 19 September 2017 (diff | hist) . . (+1,006) . . N SCAN-pc laptop (Created page with "= Introduction = Bought by Janet Cox-Singh for use exclusively with Oxford Nanopore's MinION USB sequencing devices = Recent Behaviour (Sept 2017) = The laptop will light...")
- 14:45, 19 September 2017 (diff | hist) . . (+21) . . Main Page
- 15:45, 15 September 2017 (diff | hist) . . (+48) . . Unicycler (current)
- 15:15, 15 September 2017 (diff | hist) . . (+253) . . Unicycler
- 15:10, 15 September 2017 (diff | hist) . . (+334) . . N Unicycler (Created page with "= Introduction = Assembles microbial genomes, like other tools, but with the differences that it handle different types of short and long reads so that it can make hybrid ass...")
- 13:24, 15 September 2017 (diff | hist) . . (+17) . . Main Page
- 16:40, 14 September 2017 (diff | hist) . . (+175) . . General Command-line Tips (current)
- 10:52, 8 September 2017 (diff | hist) . . (+1) . . ChIP-Seq Top2 in Yeast
- 10:51, 8 September 2017 (diff | hist) . . (+336) . . ChIP-Seq Top2 in Yeast
- 18:05, 21 August 2017 (diff | hist) . . (+280) . . RedHat
- 17:55, 21 August 2017 (diff | hist) . . (+133) . . RedHat
- 17:53, 21 August 2017 (diff | hist) . . (+612) . . RedHat
- 23:43, 8 August 2017 (diff | hist) . . (+10) . . ChIP-Seq Top2 in Yeast
- 23:41, 8 August 2017 (diff | hist) . . (0) . . ChIP-Seq Top2 in Yeast
- 23:29, 8 August 2017 (diff | hist) . . (+1,164) . . ChIP-Seq Top2 in Yeast
- 11:34, 8 August 2017 (diff | hist) . . (-12) . . ChIP-Seq Top2 in Yeast
- 11:31, 8 August 2017 (diff | hist) . . (+1,449) . . ChIP-Seq Top2 in Yeast
- 11:20, 8 August 2017 (diff | hist) . . (0) . . ChIP-Seq Top2 in Yeast
- 23:54, 7 August 2017 (diff | hist) . . (+226) . . Macs2 (current)
- 15:40, 7 August 2017 (diff | hist) . . (+1,074) . . ChIP-Seq Top2 in Yeast
- 17:16, 4 August 2017 (diff | hist) . . (+385) . . Meryl (current)
- 17:07, 4 August 2017 (diff | hist) . . (+6,254) . . N Meryl (Created page with "= Introduction = This is a kmer coounting program, part of a larger suite of tools at kmer.sourceforge.net It's by Brian Walenz of Kanu (MinION genome assembly fame). = Hel...")
- 16:59, 4 August 2017 (diff | hist) . . (+13) . . Main Page
- 08:08, 4 August 2017 (diff | hist) . . (+34) . . JBrowse (current)
- 18:37, 30 July 2017 (diff | hist) . . (+462) . . ChIP-Seq Top2 in Yeast
- 18:35, 30 July 2017 (diff | hist) . . (+2) . . ChIP-Seq Top2 in Yeast
- 18:34, 30 July 2017 (diff | hist) . . (+134) . . ChIP-Seq Top2 in Yeast
- 18:23, 30 July 2017 (diff | hist) . . (+274) . . ChIP-Seq Top2 in Yeast
- 18:20, 30 July 2017 (diff | hist) . . (-40) . . Main Page
- 18:19, 30 July 2017 (diff | hist) . . (+425) . . N ChIP-Seq Top2 in Yeast (Created page with "= Introduction = This wiki page combines the two sequencing experiments of ChIP-Seq on yeast samples udring June / July 2017. * ChIP-Seq Top2 peak-calling * ChIP-Seq T...")
- 07:50, 21 July 2017 (diff | hist) . . (+466) . . ChIP-Seq Top2 peak-calling E2
- 21:27, 20 July 2017 (diff | hist) . . (-53) . . ChIP-Seq Top2 peak-calling E2
- 21:23, 20 July 2017 (diff | hist) . . (+1,245) . . ChIP-Seq Top2 peak-calling E2
- 13:35, 20 July 2017 (diff | hist) . . (+269) . . JBrowse
- 10:27, 20 July 2017 (diff | hist) . . (+1,318) . . SWATH-MS Data Analysis (current)
- 14:30, 18 July 2017 (diff | hist) . . (+127) . . FASTQC and MultiQC (current)
- 13:44, 18 July 2017 (diff | hist) . . (+365) . . FASTQC and MultiQC
- 17:37, 17 July 2017 (diff | hist) . . (+35) . . ChIP-Seq Top2 peak-calling E2
- 17:32, 17 July 2017 (diff | hist) . . (0) . . ChIP-Seq Top2 peak-calling E2
- 17:29, 17 July 2017 (diff | hist) . . (+36) . . Main Page
- 17:26, 17 July 2017 (diff | hist) . . (-978) . . m ChIP-Seq Top2 peak-calling E2
- 17:08, 17 July 2017 (diff | hist) . . (+1,446) . . ChIP-Seq Top2 peak-calling E2
- 16:57, 17 July 2017 (diff | hist) . . (+4,892) . . N ChIP-Seq Top2 peak-calling E2 (Created page with "= Introduction = ChIP-Seq on Mutant vs. Wildtype, two states, 4 sets of pairs each, for a total of 16 pairs of paired-end datasets. The generic pipeline One of the authors...")
- 16:45, 17 July 2017 (diff | hist) . . (+13) . . ChIP-Seq Top2 peak-calling
- 14:58, 12 July 2017 (diff | hist) . . (+303) . . ChIP-Seq Top2 peak-calling
- 14:52, 12 July 2017 (diff | hist) . . (+289) . . ChIP-Seq Top2 peak-calling
- 14:46, 12 July 2017 (diff | hist) . . (0) . . N File:Uls1 teld0.png (current)
- 14:45, 12 July 2017 (diff | hist) . . (0) . . N File:Wt teld0.png (current)
- 10:55, 12 July 2017 (diff | hist) . . (0) . . Macs2
- 13:11, 7 July 2017 (diff | hist) . . (+2) . . CallSNPs.py
- 14:27, 6 July 2017 (diff | hist) . . (+414) . . JBrowse
- 13:50, 6 July 2017 (diff | hist) . . (+247) . . JBrowse
- 10:13, 6 July 2017 (diff | hist) . . (+42) . . N SWATH-MS Data Analysis (Created page with "= Introduction = = Links = * Pyprophet")
- 10:11, 6 July 2017 (diff | hist) . . (+47) . . Main Page
- 16:26, 4 July 2017 (diff | hist) . . (+13) . . RedHat
- 16:03, 4 July 2017 (diff | hist) . . (+287) . . RedHat
- 15:23, 4 July 2017 (diff | hist) . . (+581) . . SNP Analysis and phylogenetics (current)
- 14:47, 4 July 2017 (diff | hist) . . (+235) . . SNP Analysis and phylogenetics
- 14:35, 4 July 2017 (diff | hist) . . (+66) . . SNP Analysis and phylogenetics
- 14:19, 4 July 2017 (diff | hist) . . (+338) . . SNP Analysis and phylogenetics
- 14:10, 4 July 2017 (diff | hist) . . (+109) . . N SNP Analysis and phylogenetics (Created page with " = Links = == Andrew Rambaut = [https://groups.google.com/forum/#!topic/beast-users/V5vRghILMfw Says] that")
- 14:09, 4 July 2017 (diff | hist) . . (+37) . . Main Page
- 13:27, 29 June 2017 (diff | hist) . . (+253) . . Macs2
- 22:47, 28 June 2017 (diff | hist) . . (+1,904) . . Thor (current)
- 17:21, 21 June 2017 (diff | hist) . . (+1) . . Aspera (current)
- 17:21, 21 June 2017 (diff | hist) . . (+157) . . Aspera
- 17:13, 21 June 2017 (diff | hist) . . (+75) . . Aspera
- 15:13, 21 June 2017 (diff | hist) . . (+393) . . N Aspera (Created page with "= Introduction = It's probably the fastest way of downloading SRA files from the Short Read Archive. It's considerbaly faster than using ''''fastq-dump''' in its download mod...")
- 14:07, 21 June 2017 (diff | hist) . . (+14) . . Main Page
- 12:25, 21 June 2017 (diff | hist) . . (+92) . . JBrowse
- 17:48, 20 June 2017 (diff | hist) . . (+129) . . JBrowse
- 00:13, 19 June 2017 (diff | hist) . . (+1) . . Research Data Management (current)
- 23:05, 18 June 2017 (diff | hist) . . (+153) . . Research Data Management
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