User contributions
- 09:21, 31 May 2019 (diff | hist) . . (+349) . . N Log files (Created page with "=Useful log files= Main useful one is /var/log/messages and contains the majority of the useful information the system produces. There's some other useful ones dependin...") (current)
- 12:58, 28 May 2019 (diff | hist) . . (+12) . . Singularity with grid engine
- 14:30, 23 May 2019 (diff | hist) . . (0) . . Mounting marvin remotely (→Unix) (current)
- 12:42, 23 May 2019 (diff | hist) . . (+146) . . Singularity with grid engine
- 12:39, 23 May 2019 (diff | hist) . . (+325) . . N Singularity with grid engine (Created page with "JW may 2019 Followed guide here: https://blogs.univa.com/2019/01/using-univa-grid-engine-with-singularity/ Pete installed singularity on phylo now a requestable resource...")
- 11:25, 23 May 2019 (diff | hist) . . (0) . . Mounting marvin remotely
- 13:44, 13 May 2019 (diff | hist) . . (+72) . . StABDMIN (→How it works)
- 13:41, 13 May 2019 (diff | hist) . . (+1,150) . . StABDMIN (→How it works)
- 13:46, 1 May 2019 (diff | hist) . . (+90) . . StABDMIN (→Restarting the server)
- 13:35, 1 May 2019 (diff | hist) . . (+94) . . StABDMIN (→Importing data into the backend)
- 13:34, 1 May 2019 (diff | hist) . . (+134) . . StABDMIN (→Restarting the server)
- 13:34, 1 May 2019 (diff | hist) . . (-136) . . StABDMIN (→Importing data into the backend)
- 13:29, 1 May 2019 (diff | hist) . . (-5) . . Main Page (→Cluster Administration)
- 13:29, 1 May 2019 (diff | hist) . . (+20) . . Main Page (→Cluster Administration)
- 11:16, 1 May 2019 (diff | hist) . . (+789) . . StABDMIN
- 11:01, 1 May 2019 (diff | hist) . . (+824) . . StABDMIN
- 10:53, 1 May 2019 (diff | hist) . . (+271) . . StABDMIN (→Keeping it running)
- 10:50, 1 May 2019 (diff | hist) . . (0) . . StABDMIN (→Restarting the server)
- 10:49, 1 May 2019 (diff | hist) . . (+8) . . StABDMIN (→Restarting the server)
- 10:49, 1 May 2019 (diff | hist) . . (-4) . . StABDMIN (→Restarting the server)
- 10:49, 1 May 2019 (diff | hist) . . (+1,053) . . N StABDMIN (Created page with "=StABDMIN Site= Currently running at: marvin.st-andrews.ac.uk on port 80. The StABDMIN site was born of the need of a way to track the users on marvin, the PIs they're assoc...")
- 10:38, 11 April 2019 (diff | hist) . . (+130) . . N Mysql (Created page with "If the mysql command doesn't work use service mysqld start to start it. Root password is the bioinformatics root password.") (current)
- 12:13, 27 March 2019 (diff | hist) . . (+123) . . Bioinformatics Wordpress Site (→Creating a blog post) (current)
- 12:12, 27 March 2019 (diff | hist) . . (0) . . N File:Export.png (current)
- 12:08, 27 March 2019 (diff | hist) . . (-52) . . Bioinformatics Wordpress Site (→Creating a blog post)
- 12:03, 27 March 2019 (diff | hist) . . (+113) . . Bioinformatics Wordpress Site (→Creating a blog post)
- 12:02, 27 March 2019 (diff | hist) . . (+501) . . Bioinformatics Wordpress Site (→Tips)
- 11:51, 27 March 2019 (diff | hist) . . (0) . . N File:Visualformbuilder.png (current)
- 11:50, 27 March 2019 (diff | hist) . . (0) . . N File:Updatepost.png (current)
- 11:50, 27 March 2019 (diff | hist) . . (0) . . N File:Newpost.png (current)
- 11:12, 15 March 2019 (diff | hist) . . (+4) . . Son of Gridengine (→edit /etc/bashrc) (current)
- 15:40, 11 March 2019 (diff | hist) . . (+125) . . Son of Gridengine (→Add the new server to the admin host)
- 15:10, 11 March 2019 (diff | hist) . . (+4) . . Son of Gridengine (→copying the default/common directory over to the node)
- 15:10, 11 March 2019 (diff | hist) . . (+8) . . Son of Gridengine (→chown -R sgeadmin.gridware sge)
- 14:45, 11 March 2019 (diff | hist) . . (+76) . . Son of Gridengine (→copying the default/common directory over to the node)
- 12:05, 11 March 2019 (diff | hist) . . (+113) . . Son of Gridengine (→Add the new server to the admin host)
- 11:58, 11 March 2019 (diff | hist) . . (+83) . . Son of Gridengine (→Add the new server to the admin host)
- 11:55, 11 March 2019 (diff | hist) . . (+157) . . Son of Gridengine (→edit /etc/bashrc)
- 11:44, 11 March 2019 (diff | hist) . . (+74) . . Son of Gridengine (→copying the default/common directory over to the node)
- 11:43, 11 March 2019 (diff | hist) . . (+84) . . Son of Gridengine (→copying the default/common directory over to the node)
- 11:39, 11 March 2019 (diff | hist) . . (+125) . . Son of Gridengine (→edit /etc/bashrc)
- 11:36, 11 March 2019 (diff | hist) . . (+141) . . Son of Gridengine (→chown -R sgeadmin.gridware sge)
- 11:24, 11 March 2019 (diff | hist) . . (+239) . . Son of Gridengine (→Install the Son of Gridware RPMs)
- 10:36, 11 March 2019 (diff | hist) . . (+59) . . Son of Gridengine (→Install the Son of Gridware RPMs)
- 09:27, 25 January 2019 (diff | hist) . . (-4) . . m Marvin and IPMI (remote hardware control) (→Blinking LEDs) (current)
- 09:27, 25 January 2019 (diff | hist) . . (+327) . . Marvin and IPMI (remote hardware control) (→IPMI Is Down)
- 11:54, 22 January 2019 (diff | hist) . . (+50) . . Marvin and IPMI (remote hardware control) (→IPMI Is Down)
- 11:50, 22 January 2019 (diff | hist) . . (+724) . . Marvin and IPMI (remote hardware control) (→IPMI Is Down)
- 11:45, 22 January 2019 (diff | hist) . . (+1,544) . . Marvin and IPMI (remote hardware control)
- 13:54, 10 January 2019 (diff | hist) . . (+268) . . N Clearing queue errors (Created page with "If a job is stuck in E in ```qstat -f``` (or ```qstat -F``` for more details) do qmod -c <queue list> so all.q would be qmod -c all.q to clear it. It may have a repatative...") (current)
- 09:56, 7 January 2019 (diff | hist) . . (+193) . . Emailing (→Introduction)
- 09:29, 7 January 2019 (diff | hist) . . (+49) . . Emailing (→Introduction)
- 15:45, 4 January 2019 (diff | hist) . . (+272) . . Emailing (→Introduction)
- 15:44, 4 January 2019 (diff | hist) . . (+346) . . Emailing (→Introduction)
- 12:08, 3 January 2019 (diff | hist) . . (+196) . . Updating the nodes (→Work done December 2018) (current)
- 10:36, 3 January 2019 (diff | hist) . . (+245) . . Updating the nodes (→Updating the nodes)
- 14:17, 21 December 2018 (diff | hist) . . (+6) . . Updating the nodes (→Updating the nodes)
- 14:16, 21 December 2018 (diff | hist) . . (+3) . . Updating the nodes (→Updating the nodes)
- 14:16, 21 December 2018 (diff | hist) . . (+172) . . Updating the nodes
- 11:37, 21 December 2018 (diff | hist) . . (+86) . . Updating the nodes (→Identifying differences)
- 11:32, 21 December 2018 (diff | hist) . . (+130) . . Updating the nodes (→Updating the nodes)
- 11:16, 21 December 2018 (diff | hist) . . (+781) . . N Updating the nodes (Created page with "==Updating the nodes== Work done December 2018 sudo subscription-manager remove --all sudo subscription-manager unregister sudo subscription-manager clean sudo subscrip...")
- 16:46, 20 December 2018 (diff | hist) . . (+342) . . N Ssmtp (Created page with "==Installing SSMTP on a node== ssmtp is required for qsub emailing. It's contained in the EPEL (extra packages for enterprise linux) repo but this doesn't seem to be working...") (current)
- 09:50, 3 December 2018 (diff | hist) . . (+57) . . Queue Manager Tips (current)
- 10:52, 21 November 2018 (diff | hist) . . (+10,964) . . N Expanding Storage (Created page with "= Introduction = Expanding purchased storage on /storage/ is actually surprisingly easy. This is all taken from Ramon's expansion of 50Tb to 56Tb (page on the wiki). More det...") (current)
- 12:48, 19 November 2018 (diff | hist) . . (+2) . . 6TB storage expansion (→Breakthrough) (current)
- 15:22, 15 November 2018 (diff | hist) . . (+121) . . N Security Scanning (Created page with "IT Services scan marvin from the inside regularly. Users is stacsirt-scanner and has sudo access. More details to come.") (current)
- 12:34, 14 November 2018 (diff | hist) . . (+204) . . Albacore (→Introduction) (current)
- 11:22, 9 November 2018 (diff | hist) . . (+17) . . Webservers (→Webservers on Marvin) (current)
- 11:13, 9 November 2018 (diff | hist) . . (+3) . . Webservers (→Webservers on Marvin)
- 11:13, 9 November 2018 (diff | hist) . . (+51) . . Webservers (→Webservers on Marvin)
- 11:12, 9 November 2018 (diff | hist) . . (+1) . . Webservers (→Webservers on Marvin)
- 11:12, 9 November 2018 (diff | hist) . . (+523) . . N Webservers (Created page with "=Webservers on Marvin= Ideally everything would be daemonised through apache, but our mod_wsgi is compiled against python 2.6 making it utterly useless. ==genDB== genDB is...")
- 15:05, 6 November 2018 (diff | hist) . . (+204) . . Biotime machine (→Vital machine details)
- 09:15, 23 October 2018 (diff | hist) . . (+394) . . Mounting marvin remotely
- 09:09, 23 October 2018 (diff | hist) . . (+871) . . N Mounting marvin remotely (Created page with "=Unix= Firstly you'll need to make a .smbcredentials file in the format: username=<username> password=********** Change the permissions: chmod 600 .smbcredentials Now...")
- 09:15, 18 October 2018 (diff | hist) . . (+1,453) . . N Conda (Created page with "WIP for progressing to user-centric conda installs Dear Cosmika, We are testing Bioconda on Marvin on a per user basis, so you have total control over it. Would you please...")
- 15:29, 17 October 2018 (diff | hist) . . (+612) . . Ssh into nodes (current)
- 10:38, 17 October 2018 (diff | hist) . . (+191) . . N Ssh into nodes (Created page with "Joe has added a whitelist system for sshing into server nodes. It'll now only allow jw279 and pjt6 to ssh into the nodes. AllowUsers jw279 pjt6 have been added to /etc/...")
- 14:28, 15 October 2018 (diff | hist) . . (+516) . . N Ftp (Created page with "File:Sftp.png # Click File and select "Site Manager" # On the new window click "New Site", select the new site and click the "Rename" button to set the name to Marvin. #...") (current)
- 14:23, 15 October 2018 (diff | hist) . . (0) . . N File:Sftp.png (current)
- 15:02, 9 October 2018 (diff | hist) . . (+144) . . N Disk usage (Created page with "There are scripts running running everynight now to track disk usage and user's usage /mnt/system_usage. results are in /mnt/system_usage/data") (current)
- 09:16, 9 October 2018 (diff | hist) . . (+77) . . Frontend Restart (→Try to get console access to the frontend)
- 14:11, 8 October 2018 (diff | hist) . . (+115) . . Admin Tips (→Red Hat Developer Toolset) (current)
- 10:22, 27 September 2018 (diff | hist) . . (+155) . . Test user (current)
- 10:21, 27 September 2018 (diff | hist) . . (+317) . . N Test user (Created page with "The test user is for testing things for raw-non-specific users. te01 Nothing in this is to be considered safe or permanent as the best way to test things is to re-create it...")
- 14:33, 17 September 2018 (diff | hist) . . (+599) . . Installing software on marvin (current)
- 14:32, 17 September 2018 (diff | hist) . . (+282) . . Installing software on marvin
- 10:07, 31 July 2018 (diff | hist) . . (+355) . . N Gendb (Created page with "Gendb is Chris Tansey/Silvia Paracchini's database project. Currently hosted in /storage/home/users/ct76/gendb_deploy. Readme in there for setup. Webserver: Using gunicorn...") (current)
- 10:19, 4 June 2018 (diff | hist) . . (0) . . m ChIP-Seq Top2 peak-calling E2 (Protected "ChIP-Seq Top2 peak-calling E2" ([Edit=Allow only administrators] (indefinite) [Move=Allow only administrators] (indefinite))) (current)
- 10:19, 4 June 2018 (diff | hist) . . (0) . . m ChIP-Seq Top2 peak-calling (Protected "ChIP-Seq Top2 peak-calling" ([Edit=Allow only administrators] (indefinite) [Move=Allow only administrators] (indefinite))) (current)
- 10:19, 4 June 2018 (diff | hist) . . (0) . . m ChIP-Seq Top2 in Yeast 12.09.2017 (Protected "ChIP-Seq Top2 in Yeast 12.09.2017" ([Edit=Allow only administrators] (indefinite) [Move=Allow only administrators] (indefinite))) (current)
- 10:19, 4 June 2018 (diff | hist) . . (0) . . m ChIP-Seq Top2 in Yeast 07.11.2017 (Protected "ChIP-Seq Top2 in Yeast 07.11.2017" ([Edit=Allow only administrators] (indefinite) [Move=Allow only administrators] (indefinite))) (current)
- 10:16, 4 June 2018 (diff | hist) . . (0) . . m ChIP-Seq Top2 in Yeast (Protected "ChIP-Seq Top2 in Yeast" ([Edit=Allow only administrators] (indefinite) [Move=Allow only administrators] (indefinite))) (current)
- 09:31, 3 May 2018 (diff | hist) . . (+206) . . H: drive on cluster (→MiSeq Data Area Backup) (current)
- 11:03, 4 April 2018 (diff | hist) . . (+229) . . Stacks (→Installation and compilation (admins only)) (current)
- 11:07, 29 March 2018 (diff | hist) . . (+31) . . Cluster Manual (→Listing Available Software) (current)
- 13:33, 26 March 2018 (diff | hist) . . (+248) . . Limiting users jobs (current)
- 13:31, 26 March 2018 (diff | hist) . . (+73) . . N Limiting users jobs (Created page with "To limit a users jobs use qconf -arqs <name> to modify this later use")
- 11:15, 8 March 2018 (diff | hist) . . (+88) . . Frontend Restart (→Bring all nodes down before restart)
- 14:55, 29 January 2018 (diff | hist) . . (+316) . . Users and Groups (→Users)
- 09:59, 25 January 2018 (diff | hist) . . (-42) . . Albacore (→Introduction)
- 11:56, 24 January 2018 (diff | hist) . . (+26) . . Interproscan (current)
- 11:13, 24 January 2018 (diff | hist) . . (+376) . . N Interproscan (Created page with "Interproscan is a big platform with a lot of data. Older versions store the data in /home/interproscan/ so to not clog up the / drive. This is suboptimal as all the files are...")
- 10:51, 24 January 2018 (diff | hist) . . (+167) . . Installing software on marvin
- 10:43, 24 January 2018 (diff | hist) . . (+313) . . Users and Groups (→Usage)
- 10:33, 24 January 2018 (diff | hist) . . (+2) . . Installing software on marvin
- 10:32, 24 January 2018 (diff | hist) . . (+134) . . Installing software on marvin (→Installing software on Marvin/Module)
- 16:56, 23 January 2018 (diff | hist) . . (+36) . . Main Page (→Cluster Administration)
- 16:45, 23 January 2018 (diff | hist) . . (+980) . . N Installing software on marvin (Created page with "=Installing software on Marvin/Module= Software needs to be installed in: /usr/local/Modules/modulefiles/tools/<software name>/<version number>/ to make use of the modules f...")
- 11:58, 23 January 2018 (diff | hist) . . (+16) . . Frontend Restart (→Introduction)
- 11:58, 23 January 2018 (diff | hist) . . (+294) . . Frontend Restart (→Introduction)
- 11:56, 23 January 2018 (diff | hist) . . (+43) . . Frontend Restart (→Bring all nodes down before restart)
- 12:45, 23 October 2017 (diff | hist) . . (0) . . File:IntroductionToUnix2017.pdf (Jw297 uploaded a new version of File:IntroductionToUnix2017.pdf) (current)
- 12:41, 23 October 2017 (diff | hist) . . (+107) . . N Introduction to Unix 2017 (Created page with "Introduction to Unix 2017 Slides Course Materials (To be uploaded)") (current)
- 12:40, 23 October 2017 (diff | hist) . . (0) . . N File:IntroductionToUnix2017.pdf
- 12:34, 23 October 2017 (diff | hist) . . (+63) . . Main Page
- 11:40, 19 December 2016 (diff | hist) . . (0) . . RAxML (→Example usage)
- 14:22, 2 December 2016 (diff | hist) . . (0) . . Frontend Restart (→Introduction)
- 13:51, 2 December 2016 (diff | hist) . . (+69) . . Cluster Manual (→Login from Microsoft Windows:)