User contributions
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- 17:25, 26 July 2016 (diff | hist) . . (+18) . . Augustus
- 15:39, 26 July 2016 (diff | hist) . . (+222) . . N Augustus (Created page with "= Introduction = Worthy gene prediction program from Mario Stanke at Greifenswald. = Admin notes only= == Compilation == Is a simple "make" but the Makefiles (especially t...")
- 15:37, 26 July 2016 (diff | hist) . . (+15) . . Main Page
- 13:05, 26 July 2016 (diff | hist) . . (+10) . . BUSCO
- 11:09, 22 July 2016 (diff | hist) . . (+302) . . BUSCO
- 11:04, 22 July 2016 (diff | hist) . . (+340) . . N BUSCO (Created page with "= Introduction = BUSCO, like Cegma, is a special tool for the field of "completeness assessment". This concerns genome assemblies, particularly ones generated de-novo, when b...")
- 10:57, 22 July 2016 (diff | hist) . . (+12) . . Main Page
- 17:13, 21 July 2016 (diff | hist) . . (-2) . . Cegma (current)
- 17:11, 21 July 2016 (diff | hist) . . (+5,160) . . N Cegma (Created page with " = How to use Cegma= By default, Cegma expects that you will only analyse one fasta sequence each time. So it has certain standard names for its output files which '''do not...")
- 17:09, 21 July 2016 (diff | hist) . . (+12) . . Main Page
- 08:18, 20 July 2016 (diff | hist) . . (+103) . . Srst2
- 17:13, 19 July 2016 (diff | hist) . . (+10) . . Srst2
- 17:12, 19 July 2016 (diff | hist) . . (+825) . . Srst2
- 16:55, 19 July 2016 (diff | hist) . . (+95) . . Srst2
- 15:59, 19 July 2016 (diff | hist) . . (+18) . . Srst2
- 15:58, 19 July 2016 (diff | hist) . . (-35) . . Srst2
- 15:50, 19 July 2016 (diff | hist) . . (+182) . . Srst2
- 15:15, 19 July 2016 (diff | hist) . . (+42) . . Patric (→Introduction) (current)
- 15:15, 19 July 2016 (diff | hist) . . (+754) . . N Patric (Created page with "= Introduction = = Guide = * Registering for Patric is a good idea. * When browsing you have an implicit workspace. You add items to it if you are interested in them. * The...")
- 15:07, 19 July 2016 (diff | hist) . . (+1) . . Main Page
- 15:07, 19 July 2016 (diff | hist) . . (+50) . . Main Page
- 18:01, 18 July 2016 (diff | hist) . . (+92) . . Miseq Prokaryote FASTQ analysis (current)
- 17:47, 18 July 2016 (diff | hist) . . (+22) . . Miseq Prokaryote FASTQ analysis
- 17:46, 18 July 2016 (diff | hist) . . (+262) . . Miseq Prokaryote FASTQ analysis
- 17:43, 18 July 2016 (diff | hist) . . (+9) . . Miseq Prokaryote FASTQ analysis
- 17:40, 18 July 2016 (diff | hist) . . (+20) . . Miseq Prokaryote FASTQ analysis
- 17:29, 18 July 2016 (diff | hist) . . (+2) . . Miseq Prokaryote FASTQ analysis
- 17:27, 18 July 2016 (diff | hist) . . (+11) . . Miseq Prokaryote FASTQ analysis
- 17:26, 18 July 2016 (diff | hist) . . (+2) . . Miseq Prokaryote FASTQ analysis
- 17:24, 18 July 2016 (diff | hist) . . (+571) . . Miseq Prokaryote FASTQ analysis
- 17:16, 18 July 2016 (diff | hist) . . (0) . . Miseq Prokaryote FASTQ analysis
- 17:15, 18 July 2016 (diff | hist) . . (+581) . . N Miseq Prokaryote FASTQ analysis (Created page with "=Introduction= We have our own Miseq machine and each week a run is carried out (each run costs about £1000 in consumibles) from various samples. They are unloaded onto HDR...")
- 17:09, 18 July 2016 (diff | hist) . . (+38) . . Main Page
- 17:55, 13 July 2016 (diff | hist) . . (+3) . . Srst2
- 18:39, 7 July 2016 (diff | hist) . . (+169) . . SPAdes
- 16:43, 6 July 2016 (diff | hist) . . (+2,538) . . FASTQC and MultiQC
- 16:43, 6 July 2016 (diff | hist) . . (+183) . . FASTQC and MultiQC
- 16:32, 6 July 2016 (diff | hist) . . (+5,010) . . N FASTQC and MultiQC (Created page with "=Introduction= Quality visualization = Help file = SYNOPSIS fastqc seqfile1 seqfile2 .. seqfileN fastqc [-o output dir] [--(no)extract] [-f fastq|bam|sam] [-c...")
- 16:32, 6 July 2016 (diff | hist) . . (+12) . . Main Page
- 15:44, 6 July 2016 (diff | hist) . . (+1) . . FASTQC (current)
- 15:44, 6 July 2016 (diff | hist) . . (+1) . . FASTQC
- 15:43, 6 July 2016 (diff | hist) . . (-7) . . FASTQC
- 15:43, 6 July 2016 (diff | hist) . . (+5,015) . . N FASTQC (Created page with "=Introduction= Quality visualization = Help file = SYNOPSIS fastqc seqfile1 seqfile2 .. seqfileN fastqc [-o output dir] [--(no)extract] [-f fastq|bam|sam]...")
- 15:42, 6 July 2016 (diff | hist) . . (+13) . . Main Page
- 18:17, 5 July 2016 (diff | hist) . . (+317) . . Trimmomatic (current)
- 18:06, 5 July 2016 (diff | hist) . . (+53) . . Trimmomatic
- 18:05, 5 July 2016 (diff | hist) . . (+171) . . Trimmomatic
- 15:54, 5 July 2016 (diff | hist) . . (+550) . . Trimmomatic
- 18:01, 2 July 2016 (diff | hist) . . (-3) . . SPAdes
- 18:01, 2 July 2016 (diff | hist) . . (+126) . . SPAdes
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