Difference between revisions of "Main Page"

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* [[Queue Manager Tips]]
 
* [[Queue Manager Tips]]
 
* [[General Command-line Tips]]
 
* [[General Command-line Tips]]
 +
* [[DRMAA for further Gridengine automation]]
  
 
= Data Examples =
 
= Data Examples =

Revision as of 11:52, 21 December 2016

Usage of Cluster

Documented Programs

Queue Manager Tips

A cluster is a shared resource with different users running different types of analyses. Nearly all clusters use a piece of software called a queue manager to fairly share out the resource. The queue manager on marvin is called Grid Engine, and it has several commands available, all beginning with q and with qsub being the most commonly used as it submits a command via a jobscript to be processed. Here are some tips:

Data Examples

Procedures

(short sequence of tasks with a certain short-term goal, often, a simple script)

Navigating genomic data websites

Explanations

Pipelines

(Workflow with a specific end-goal)

Protocols

(Extensive workflows with different with several possible end goals)

Cluster Administration

Courses

I2U4BGA

Templates

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