Difference between revisions of "Main Page"

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* [[Glossary]]
 
* [[Glossary]]
 
* [[Key Bindings]]
 
* [[Key Bindings]]
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* [[awk one-liners and scripts]]
 
* [[Cheatsheets]]
 
* [[Cheatsheets]]
 
* [[Links]]
 
* [[Links]]
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==Templates==
 
==Templates==
 
* [[edgenl2g]]
 
* [[edgenl2g]]

Revision as of 18:29, 13 March 2017

Usage of Cluster

Documented Programs

The following can be seen as extra notes referring to these programs usage on the marvin cluster, with an emphais on example use-cases. Most, if not all, will have their own special websites, with more detailed manuals and further information.

Queue Manager Tips

A cluster is a shared resource with different users running different types of analyses. Nearly all clusters use a piece of software called a queue manager to fairly share out the resource. The queue manager on marvin is called Grid Engine, and it has several commands available, all beginning with q and with qsub being the most commonly used as it submits a command via a jobscript to be processed. Here are some tips:

Data Examples

Procedures

(short sequence of tasks with a certain short-term goal, often, a simple script)

Navigating genomic data websites

Explanations

Pipelines

(Workflow with a specific end-goal)

Protocols

(Extensive workflows with different with several possible end goals)

Cluster Administration

Courses

I2U4BGA


Templates

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