Difference between revisions of "Main Page"

From wiki
Jump to: navigation, search
Line 137: Line 137:
* [[Key Bindings]]
* [[Key Bindings]]
* [[Cheatsheets]]
* [[Cheatsheets]]
* [[Links]]
* [[edgenl2g]]
* [[edgenl2g]]

Revision as of 12:37, 28 February 2017

Usage of Cluster

Documented Programs

The following can be seen as extra notes referring to these programs usage on the marvin cluster, with an emphais on example use-cases. Most, if not all, will have their own special websites, with more detailed manuals and further information.

Queue Manager Tips

A cluster is a shared resource with different users running different types of analyses. Nearly all clusters use a piece of software called a queue manager to fairly share out the resource. The queue manager on marvin is called Grid Engine, and it has several commands available, all beginning with q and with qsub being the most commonly used as it submits a command via a jobscript to be processed. Here are some tips:

Data Examples


(short sequence of tasks with a certain short-term goal, often, a simple script)

Navigating genomic data websites



(Workflow with a specific end-goal)


(Extensive workflows with different with several possible end goals)

Cluster Administration