Difference between revisions of "ViennaRNA"

From wiki
Jump to: navigation, search
 
Line 1: Line 1:
 
= Introduction =
 
= Introduction =
  
Quite a large software package for dealing with RNA and RNA structure
+
Quite a large software package for dealing with RNA and RNA structure.
 +
 
 +
It is only available on the biotime machine.
 +
 
 +
= Executables =
  
 
Here are the executables that it installs:
 
Here are the executables that it installs:

Latest revision as of 16:36, 5 October 2017

Introduction

Quite a large software package for dealing with RNA and RNA structure.

It is only available on the biotime machine.

Executables

Here are the executables that it installs:

  • RNAfold
  • RNAeval
  • RNAheat
  • RNApdist
  • RNAdistance
  • RNAinverse
  • RNAplot
  • RNAsubopt
  • RNALfold
  • RNAcofold
  • RNApaln
  • RNAduplex
  • RNAalifold
  • RNAplfold
  • RNAup
  • RNAaliduplex
  • RNALalifold
  • RNA2Dfold
  • RNAparconv
  • RNAPKplex
  • RNAplex
  • RNAsnoop
  • RNApvmin
  • b2ct
  • popt
  • ct2db
  • Kinfold
  • RNAforester
  • RNAlocmin

Installation

ViennaRNA has a perl interface as well as a python interface for both pythons, version 2 and version 3.