Tophat

Introduction =

The well known sloice-aware aligner or mapper, now being phased out in favour of HISAT2

Usage

module load tophat

This will load the latest version (2.1.1 from 2016). To see the help:

tophat -h

Note the reference to the webpage at the end, that proves to be an easier help resource. As it's some what long, the important parts are extracted here.