From wiki
Revision as of 17:50, 31 March 2016 by Rf (talk | contribs)
Jump to: navigation, search


This python based tool with two main dependencies (samtools and bowtie2) carries out mapping of short reads to detect overall three targets: 1) genes 2) alleles and 3) multi-locus sequence types (MLST) from WGS data (which we can take to be the short reads).


  • MLST: MultiLocus Sequence Type