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In the wide world of software, squid is a proxy server used in high traffic websites, but this squid is Sean Eddy's utilites for general sequence reading.

Its list of executable is as follows:

  • compalign
  • alistat
  • afetch
  • shuffle
  • sfetch
  • seqstat
  • seqsplit
  • revcomp
  • compstruct
  • weight
  • translate
  • sreformat
  • sindex

For the library, a static one is created and somehow the system recognises the -lsquid linking direction ... perhaps because /usr/local/lib is a very standard location, in an unusual location, it may not be so easy.