Difference between revisions of "Squid"
(Created page with "= Introduction = In the wide world of software, squid is a proxy server used in high traffic websites, but this squid is Sean Eddy's utilites for general sequence reading. I...") |
|||
| (One intermediate revision by the same user not shown) | |||
| Line 2: | Line 2: | ||
In the wide world of software, squid is a proxy server used in high traffic websites, but this squid is Sean Eddy's utilites for general sequence reading. | In the wide world of software, squid is a proxy server used in high traffic websites, but this squid is Sean Eddy's utilites for general sequence reading. | ||
| + | |||
| + | This is only available on the biotime machine. | ||
| + | |||
| + | = Executables = | ||
Its list of executable is as follows: | Its list of executable is as follows: | ||
| Line 18: | Line 22: | ||
* sreformat | * sreformat | ||
* sindex | * sindex | ||
| + | |||
| + | For the library, a static one is created and somehow the system recognises the '''-lsquid''' linking direction ... perhaps because /usr/local/lib is a very standard location, in an unusual location, it may not be so easy. | ||
Latest revision as of 17:35, 5 October 2017
Introduction
In the wide world of software, squid is a proxy server used in high traffic websites, but this squid is Sean Eddy's utilites for general sequence reading.
This is only available on the biotime machine.
Executables
Its list of executable is as follows:
- compalign
- alistat
- afetch
- shuffle
- sfetch
- seqstat
- seqsplit
- revcomp
- compstruct
- weight
- translate
- sreformat
- sindex
For the library, a static one is created and somehow the system recognises the -lsquid linking direction ... perhaps because /usr/local/lib is a very standard location, in an unusual location, it may not be so easy.
