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  1. (hist) ‎Biolinux Source course ‎[171,741 bytes]
  2. (hist) ‎Pandoc modified manual ‎[162,413 bytes]
  3. (hist) ‎Hdi2u S00 ‎[24,146 bytes]
  4. (hist) ‎Hdi2u commandbased exercises ‎[24,146 bytes]
  5. (hist) ‎OrthoFinder ‎[23,584 bytes]
  6. (hist) ‎MicroRNA and Salmo Salar ‎[22,764 bytes]
  7. (hist) ‎Trinity Protocol ‎[20,207 bytes]
  8. (hist) ‎Course itself ‎[19,377 bytes]
  9. (hist) ‎Differential Expression Exercise ‎[19,223 bytes]
  10. (hist) ‎Canu ‎[16,921 bytes]
  11. (hist) ‎Two Eel Scaffolds ‎[15,676 bytes]
  12. (hist) ‎STAR BEAST ‎[15,253 bytes]
  13. (hist) ‎Mash ‎[14,287 bytes]
  14. (hist) ‎Key Aspects of R Exercise ‎[13,518 bytes]
  15. (hist) ‎H: drive on cluster ‎[13,464 bytes]
  16. (hist) ‎Repeatmasker ‎[13,011 bytes]
  17. (hist) ‎Hdi2u session 1 ‎[12,822 bytes]
  18. (hist) ‎SSPACE ‎[12,324 bytes]
  19. (hist) ‎RedHat ‎[12,200 bytes]
  20. (hist) ‎Srst2 ‎[12,020 bytes]
  21. (hist) ‎Available Software ‎[11,951 bytes]
  22. (hist) ‎Cluster Manual ‎[11,375 bytes]
  23. (hist) ‎Prokka ‎[11,272 bytes]
  24. (hist) ‎Thor ‎[11,126 bytes]
  25. (hist) ‎Macs2 ‎[11,052 bytes]
  26. (hist) ‎Sra-tools ‎[10,999 bytes]
  27. (hist) ‎Expanding Storage ‎[10,964 bytes]
  28. (hist) ‎Samtools ‎[10,856 bytes]
  29. (hist) ‎6TB storage expansion ‎[10,649 bytes]
  30. (hist) ‎CallSNPs.py ‎[10,374 bytes]
  31. (hist) ‎Trinity ‎[9,513 bytes]
  32. (hist) ‎FASTQC and MultiQC ‎[9,210 bytes]
  33. (hist) ‎Bamtools ‎[8,952 bytes]
  34. (hist) ‎Users disk usage ‎[8,773 bytes]
  35. (hist) ‎ChIP-Seq Top2 in Yeast 07.11.2017 ‎[8,689 bytes]
  36. (hist) ‎Hardware Issues ‎[8,633 bytes]
  37. (hist) ‎Directory Organization Exercise ‎[8,413 bytes]
  38. (hist) ‎I2rda Course Cheatsheet ‎[8,139 bytes]
  39. (hist) ‎Quality of Mapping Exercise ‎[8,125 bytes]
  40. (hist) ‎BLAST ‎[7,718 bytes]
  41. (hist) ‎MinION (Oxford Nanopore) ‎[7,596 bytes]
  42. (hist) ‎ChIP-Seq Top2 in Yeast ‎[7,522 bytes]
  43. (hist) ‎GapFiller ‎[7,483 bytes]
  44. (hist) ‎ChIP-Seq Top2 peak-calling E2 ‎[7,053 bytes]
  45. (hist) ‎Quality Control Preprocessing Talk ‎[6,858 bytes]
  46. (hist) ‎Quality and Control Preprocessing Talk ‎[6,858 bytes]
  47. (hist) ‎Mapping to Reference Exercise ‎[6,692 bytes]
  48. (hist) ‎Meryl ‎[6,639 bytes]
  49. (hist) ‎Intro to RNA-Seq Data Analysis Course ‎[6,568 bytes]
  50. (hist) ‎Differential Expression Talk ‎[6,420 bytes]
  51. (hist) ‎Frontend Restart ‎[6,411 bytes]
  52. (hist) ‎Commandline Navigation ‎[6,405 bytes]
  53. (hist) ‎Hdi2u rendertotsv exercise ‎[6,086 bytes]
  54. (hist) ‎Main Page ‎[5,862 bytes]
  55. (hist) ‎Node1 issues ‎[5,853 bytes]
  56. (hist) ‎Ensembl ‎[5,798 bytes]
  57. (hist) ‎Backups ‎[5,638 bytes]
  58. (hist) ‎Marvin and IPMI (remote hardware control) ‎[5,536 bytes]
  59. (hist) ‎Bottlenose dolphin population genomic analysis ‎[5,336 bytes]
  60. (hist) ‎Kallisto ‎[5,226 bytes]
  61. (hist) ‎BUSCO ‎[5,190 bytes]
  62. (hist) ‎Repeatmodeler ‎[5,168 bytes]
  63. (hist) ‎Cegma ‎[5,158 bytes]
  64. (hist) ‎BamQC ‎[5,102 bytes]
  65. (hist) ‎Functional Analysis Exercise ‎[5,090 bytes]
  66. (hist) ‎FASTQC ‎[5,010 bytes]
  67. (hist) ‎Quality Control and Preprocessing Talk ‎[5,003 bytes]
  68. (hist) ‎Ea-utils ‎[4,902 bytes]
  69. (hist) ‎ChIP-Seq Top2 peak-calling ‎[4,892 bytes]
  70. (hist) ‎Conda ‎[4,865 bytes]
  71. (hist) ‎SPAdes ‎[4,706 bytes]
  72. (hist) ‎Bedtools ‎[4,554 bytes]
  73. (hist) ‎StABDMIN ‎[4,389 bytes]
  74. (hist) ‎Estimating Gene Count Exercise ‎[4,331 bytes]
  75. (hist) ‎Visualisation of mapped reads ‎[4,165 bytes]
  76. (hist) ‎Stacks ‎[4,124 bytes]
  77. (hist) ‎Why a Queue Manager? ‎[4,011 bytes]
  78. (hist) ‎KentUtils ‎[4,004 bytes]
  79. (hist) ‎Bwa ‎[3,988 bytes]
  80. (hist) ‎Rnammer ‎[3,970 bytes]
  81. (hist) ‎Qiime2 ‎[3,862 bytes]
  82. (hist) ‎Conda bioconda ‎[3,842 bytes]
  83. (hist) ‎Hdi2u dirorg exercise ‎[3,839 bytes]
  84. (hist) ‎Quality Control and Preprocessing Exercise ‎[3,712 bytes]
  85. (hist) ‎Biotime machine ‎[3,698 bytes]
  86. (hist) ‎Disk management after shelf disk failure ‎[3,534 bytes]
  87. (hist) ‎Son of Gridengine ‎[3,477 bytes]
  88. (hist) ‎Estimating Gen Count Exercise ‎[3,449 bytes]
  89. (hist) ‎Abacas ‎[3,337 bytes]
  90. (hist) ‎Mapping to Reference Talk ‎[3,313 bytes]
  91. (hist) ‎Picard-tools ‎[3,255 bytes]
  92. (hist) ‎Detonate ‎[3,195 bytes]
  93. (hist) ‎Incident: Can't connect to BerkeleyDB ‎[3,153 bytes]
  94. (hist) ‎RAxML ‎[3,094 bytes]
  95. (hist) ‎SAN relocation task ‎[2,997 bytes]
  96. (hist) ‎Deeptools ‎[2,969 bytes]
  97. (hist) ‎Hdi2u intro ‎[2,967 bytes]
  98. (hist) ‎MinION Coverage sensitivity analysis ‎[2,868 bytes]
  99. (hist) ‎Home directories max-out incident 28.11.2016 ‎[2,773 bytes]
  100. (hist) ‎Singularity with grid engine ‎[2,764 bytes]
  101. (hist) ‎VCF ‎[2,727 bytes]
  102. (hist) ‎JBrowse ‎[2,690 bytes]
  103. (hist) ‎Blas Libraries ‎[2,684 bytes]
  104. (hist) ‎Cramtools ‎[2,588 bytes]
  105. (hist) ‎One-liners ‎[2,586 bytes]
  106. (hist) ‎Poretools ‎[2,561 bytes]
  107. (hist) ‎Emailing ‎[2,539 bytes]
  108. (hist) ‎Mapping to Reference ‎[2,484 bytes]
  109. (hist) ‎ChIP-Seq Top2 in Yeast 12.09.2017 ‎[2,473 bytes]
  110. (hist) ‎I2rda m2rx ‎[2,433 bytes]
  111. (hist) ‎R ‎[2,346 bytes]
  112. (hist) ‎Command Line Exercises ‎[2,307 bytes]
  113. (hist) ‎Admin Tips ‎[2,303 bytes]
  114. (hist) ‎Users and Groups ‎[2,242 bytes]
  115. (hist) ‎Installing software on marvin ‎[2,164 bytes]
  116. (hist) ‎Functional Analysis Talk ‎[2,130 bytes]
  117. (hist) ‎Globus gridftp ‎[2,124 bytes]
  118. (hist) ‎Updating BLAST databases ‎[2,065 bytes]
  119. (hist) ‎Bowtie ‎[2,059 bytes]
  120. (hist) ‎Queue Manager Tips ‎[2,021 bytes]
  121. (hist) ‎Incorrect rebooting of marvin 19.09.2017 ‎[2,006 bytes]
  122. (hist) ‎MicroRNAs ‎[1,949 bytes]
  123. (hist) ‎SCAN-pc laptop ‎[1,945 bytes]
  124. (hist) ‎Satsuma ‎[1,919 bytes]
  125. (hist) ‎Memory repair glitch 16.02.2017 ‎[1,913 bytes]
  126. (hist) ‎Edgen RNAseq ‎[1,870 bytes]
  127. (hist) ‎Mapping.py ‎[1,724 bytes]
  128. (hist) ‎Synthetic Long reads ‎[1,715 bytes]
  129. (hist) ‎Pyrad ‎[1,708 bytes]
  130. (hist) ‎Edgenl2g ‎[1,701 bytes]
  131. (hist) ‎Node9 network failure incident 16-20.03.2017 ‎[1,677 bytes]
  132. (hist) ‎New schedule ‎[1,637 bytes]
  133. (hist) ‎Updating the nodes ‎[1,619 bytes]
  134. (hist) ‎Python DRMAA ‎[1,588 bytes]
  135. (hist) ‎Miseq Prokaryote FASTQ analysis ‎[1,572 bytes]
  136. (hist) ‎PASA ‎[1,560 bytes]
  137. (hist) ‎Slurm commands ‎[1,546 bytes]
  138. (hist) ‎Calculating coverage ‎[1,544 bytes]
  139. (hist) ‎T-coffee ‎[1,540 bytes]
  140. (hist) ‎Blast ‎[1,519 bytes]
  141. (hist) ‎Quast ‎[1,511 bytes]
  142. (hist) ‎Qualimap ‎[1,459 bytes]
  143. (hist) ‎Hdi2u S16 ‎[1,425 bytes]
  144. (hist) ‎Trimmomatic ‎[1,415 bytes]
  145. (hist) ‎Bioinformatics Wordpress Site ‎[1,408 bytes]
  146. (hist) ‎Perl ‎[1,394 bytes]
  147. (hist) ‎Hdi2u S17 ‎[1,381 bytes]
  148. (hist) ‎SWATH-MS Data Analysis ‎[1,360 bytes]
  149. (hist) ‎Tophat ‎[1,346 bytes]
  150. (hist) ‎SNP Analysis and phylogenetics ‎[1,329 bytes]
  151. (hist) ‎Estimating Gene Count Talk ‎[1,328 bytes]
  152. (hist) ‎Quality of Mapping Talk ‎[1,315 bytes]
  153. (hist) ‎CMake ‎[1,314 bytes]
  154. (hist) ‎Environment-modules ‎[1,312 bytes]
  155. (hist) ‎Maximum Likelihood ‎[1,302 bytes]
  156. (hist) ‎Velvet ‎[1,298 bytes]
  157. (hist) ‎Cheatsheets ‎[1,276 bytes]
  158. (hist) ‎Hdi2u S10 ‎[1,271 bytes]
  159. (hist) ‎Mounting marvin remotely ‎[1,265 bytes]
  160. (hist) ‎Hdi2u S11 ‎[1,265 bytes]
  161. (hist) ‎Hdi2u S12 ‎[1,249 bytes]
  162. (hist) ‎Hdi2u S19 ‎[1,235 bytes]
  163. (hist) ‎Diamond ‎[1,228 bytes]
  164. (hist) ‎Hdi2u S13 ‎[1,212 bytes]
  165. (hist) ‎PGAP ‎[1,210 bytes]
  166. (hist) ‎Research Data Management ‎[1,205 bytes]
  167. (hist) ‎Hdi2u S15 ‎[1,203 bytes]
  168. (hist) ‎Queue Manager emailing when jobs run ‎[1,197 bytes]
  169. (hist) ‎Blast2go: b2g4pipe ‎[1,189 bytes]
  170. (hist) ‎RAM and RAM slots ‎[1,120 bytes]
  171. (hist) ‎GenomeTools ‎[1,109 bytes]
  172. (hist) ‎Hdi2u S02 ‎[1,096 bytes]
  173. (hist) ‎General Command-line Tips ‎[1,078 bytes]
  174. (hist) ‎Glossary ‎[1,065 bytes]
  175. (hist) ‎Mounting drives ‎[1,024 bytes]
  176. (hist) ‎MinKNOW folders and log files ‎[1,021 bytes]
  177. (hist) ‎Samba like connection ‎[980 bytes]
  178. (hist) ‎RNASeq library preparation ‎[973 bytes]
  179. (hist) ‎Hdi2u S04 ‎[972 bytes]
  180. (hist) ‎Hdi2u S25 ‎[966 bytes]
  181. (hist) ‎Restart a node) ‎[957 bytes]
  182. (hist) ‎Hdi2u S03 ‎[928 bytes]
  183. (hist) ‎Banjo ‎[918 bytes]
  184. (hist) ‎Hdi2u S09 ‎[908 bytes]
  185. (hist) ‎Quick start ‎[904 bytes]
  186. (hist) ‎Hdi2u S06 ‎[896 bytes]
  187. (hist) ‎Hdi2u S05 ‎[883 bytes]
  188. (hist) ‎PairwiseCallSNPs ‎[879 bytes]
  189. (hist) ‎Windows network connect ‎[875 bytes]
  190. (hist) ‎Bcftools ‎[871 bytes]
  191. (hist) ‎Galaxy Setup ‎[848 bytes]
  192. (hist) ‎Sickle ‎[847 bytes]
  193. (hist) ‎Gubbins ‎[831 bytes]
  194. (hist) ‎Hdi2u S21 ‎[830 bytes]
  195. (hist) ‎Reset a password ‎[816 bytes]
  196. (hist) ‎Normalization ‎[815 bytes]
  197. (hist) ‎Kennedy manual ‎[813 bytes]
  198. (hist) ‎Augustus ‎[812 bytes]
  199. (hist) ‎Blat ‎[811 bytes]
  200. (hist) ‎Assembly-stats ‎[804 bytes]
  201. (hist) ‎Ssh into nodes ‎[803 bytes]
  202. (hist) ‎Patric ‎[796 bytes]
  203. (hist) ‎Hdi2u S22 ‎[793 bytes]
  204. (hist) ‎Python ‎[781 bytes]
  205. (hist) ‎Hdi2u S08 ‎[765 bytes]
  206. (hist) ‎Restart a node ‎[762 bytes]
  207. (hist) ‎Firewall and iptables ‎[717 bytes]
  208. (hist) ‎Hdi2u S01 ‎[704 bytes]
  209. (hist) ‎Clustal ‎[675 bytes]
  210. (hist) ‎Mega ‎[671 bytes]
  211. (hist) ‎Theoretical background ‎[666 bytes]
  212. (hist) ‎Windows users ‎[655 bytes]
  213. (hist) ‎Hdi2u S14 ‎[648 bytes]
  214. (hist) ‎ViennaRNA ‎[643 bytes]
  215. (hist) ‎Snpcallphylo ‎[640 bytes]
  216. (hist) ‎Loggin on to Kennedy ‎[637 bytes]
  217. (hist) ‎Cd-hit ‎[637 bytes]
  218. (hist) ‎Squid ‎[636 bytes]
  219. (hist) ‎Unicycler ‎[635 bytes]
  220. (hist) ‎Aspera ‎[626 bytes]
  221. (hist) ‎RSeQC ‎[626 bytes]
  222. (hist) ‎Ansible ‎[601 bytes]
  223. (hist) ‎Webservers ‎[595 bytes]
  224. (hist) ‎Lastz ‎[576 bytes]
  225. (hist) ‎Queue Manager : shell script command ‎[546 bytes]
  226. (hist) ‎Pull and push to to and from MARVIN ‎[539 bytes]
  227. (hist) ‎Hdi2u S24 ‎[538 bytes]
  228. (hist) ‎Bgenie ‎[534 bytes]
  229. (hist) ‎Ftp ‎[516 bytes]
  230. (hist) ‎Archaeopteryx and Forester ‎[508 bytes]
  231. (hist) ‎ETE ‎[498 bytes]
  232. (hist) ‎Last ‎[490 bytes]
  233. (hist) ‎Mobaxterm for Windows ‎[483 bytes]
  234. (hist) ‎Roary ‎[476 bytes]
  235. (hist) ‎Test user ‎[472 bytes]
  236. (hist) ‎I2rdalinks ‎[457 bytes]
  237. (hist) ‎IGSR/1000 Genomes ‎[454 bytes]
  238. (hist) ‎Hdi2u S07 ‎[440 bytes]
  239. (hist) ‎Interproscan ‎[402 bytes]
  240. (hist) ‎Apple MAC people + Linux ‎[388 bytes]
  241. (hist) ‎Albacore ‎[388 bytes]
  242. (hist) ‎Hdi2u S23 ‎[385 bytes]
  243. (hist) ‎Ariba ‎[382 bytes]
  244. (hist) ‎Nseg ‎[357 bytes]
  245. (hist) ‎Gendb ‎[355 bytes]
  246. (hist) ‎Hdi2u S18 ‎[352 bytes]
  247. (hist) ‎Log files ‎[349 bytes]
  248. (hist) ‎Ssmtp ‎[342 bytes]
  249. (hist) ‎Submit a job and monitor queues ‎[338 bytes]
  250. (hist) ‎Limiting users jobs ‎[321 bytes]

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