User contributions
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- 14:17, 20 October 2017 (diff | hist) . . (+552) . . Repeatmodeler
- 14:03, 20 October 2017 (diff | hist) . . (+353) . . Repeatmodeler
- 13:37, 20 October 2017 (diff | hist) . . (+3) . . Repeatmodeler
- 13:11, 20 October 2017 (diff | hist) . . (+597) . . Repeatmodeler
- 12:38, 20 October 2017 (diff | hist) . . (+1,964) . . Repeatmodeler
- 11:56, 20 October 2017 (diff | hist) . . (+294) . . Repeatmodeler
- 11:21, 20 October 2017 (diff | hist) . . (+57) . . Repeatmodeler
- 11:19, 20 October 2017 (diff | hist) . . (+540) . . Repeatmodeler
- 10:56, 20 October 2017 (diff | hist) . . (+122) . . Repeatmodeler
- 10:39, 20 October 2017 (diff | hist) . . (+193) . . N Repeatmodeler (Created page with "= Introdcuction = = Installation notes = nseg and nmerge (included in nseg) are quite old programs coded in C by NCBI. These were installed on all machines in /usr/local/bi...")
- 10:30, 20 October 2017 (diff | hist) . . (+21) . . Main Page
- 15:19, 17 October 2017 (diff | hist) . . (+242) . . Biotime machine
- 15:07, 17 October 2017 (diff | hist) . . (+426) . . Biotime machine
- 14:47, 17 October 2017 (diff | hist) . . (+469) . . Biotime machine
- 14:38, 17 October 2017 (diff | hist) . . (+145) . . Biotime machine
- 14:34, 17 October 2017 (diff | hist) . . (+203) . . Biotime machine
- 10:55, 17 October 2017 (diff | hist) . . (+106) . . MinION (Oxford Nanopore) (current)
- 11:45, 16 October 2017 (diff | hist) . . (+113) . . SCAN-pc laptop (current)
- 11:36, 16 October 2017 (diff | hist) . . (+168) . . SCAN-pc laptop
- 11:31, 16 October 2017 (diff | hist) . . (+430) . . SCAN-pc laptop
- 12:59, 11 October 2017 (diff | hist) . . (+87) . . Bisulfite Sequencing (current)
- 12:57, 11 October 2017 (diff | hist) . . (+166) . . N Bisulfite Sequencing (Created page with "= Introduction = Sequencing which causes unmethylated cytosine to be repaced by uracil. In this way, the methylation (which silences genes) pattern can be detected.")
- 12:54, 11 October 2017 (diff | hist) . . (-1) . . Main Page
- 12:54, 11 October 2017 (diff | hist) . . (+27) . . Main Page
- 23:10, 9 October 2017 (diff | hist) . . (-1) . . ChIP-Seq Top2 in Yeast
- 22:51, 9 October 2017 (diff | hist) . . (+301) . . ChIP-Seq Top2 in Yeast
- 22:31, 9 October 2017 (diff | hist) . . (+133) . . ChIP-Seq Top2 in Yeast
- 22:26, 9 October 2017 (diff | hist) . . (+264) . . ChIP-Seq Top2 in Yeast
- 17:39, 9 October 2017 (diff | hist) . . (+286) . . ChIP-Seq Top2 in Yeast
- 17:34, 9 October 2017 (diff | hist) . . (+414) . . ChIP-Seq Top2 in Yeast
- 17:19, 9 October 2017 (diff | hist) . . (0) . . ChIP-Seq Top2 in Yeast
- 17:13, 9 October 2017 (diff | hist) . . (+332) . . ChIP-Seq Top2 in Yeast
- 16:49, 9 October 2017 (diff | hist) . . (+157) . . GenomeTools (current)
- 13:31, 9 October 2017 (diff | hist) . . (+552) . . GenomeTools
- 11:05, 9 October 2017 (diff | hist) . . (+143) . . GenomeTools
- 11:47, 6 October 2017 (diff | hist) . . (+1) . . Banjo (current)
- 10:27, 6 October 2017 (diff | hist) . . (+84) . . CallSNPs.py (current)
- 10:09, 6 October 2017 (diff | hist) . . (+172) . . CallSNPs.py
- 10:07, 6 October 2017 (diff | hist) . . (+250) . . Banjo
- 09:10, 6 October 2017 (diff | hist) . . (+149) . . MicroRNAs
- 17:36, 5 October 2017 (diff | hist) . . (+64) . . ViennaRNA (current)
- 17:35, 5 October 2017 (diff | hist) . . (+65) . . Squid (current)
- 17:26, 5 October 2017 (diff | hist) . . (+223) . . Squid
- 17:24, 5 October 2017 (diff | hist) . . (+1) . . BLAST
- 17:23, 5 October 2017 (diff | hist) . . (+1,031) . . BLAST
- 14:30, 5 October 2017 (diff | hist) . . (+348) . . N Squid (Created page with "= Introduction = In the wide world of software, squid is a proxy server used in high traffic websites, but this squid is Sean Eddy's utilites for general sequence reading. I...")
- 14:28, 5 October 2017 (diff | hist) . . (+13) . . Main Page
- 13:36, 5 October 2017 (diff | hist) . . (-1) . . Perl (current)
- 13:35, 5 October 2017 (diff | hist) . . (+461) . . Perl
- 13:09, 5 October 2017 (diff | hist) . . (+25) . . Perl
- 13:08, 5 October 2017 (diff | hist) . . (+398) . . Perl
- 12:19, 5 October 2017 (diff | hist) . . (+369) . . ViennaRNA
- 12:17, 5 October 2017 (diff | hist) . . (0) . . Perl
- 12:16, 5 October 2017 (diff | hist) . . (+94) . . Perl
- 12:08, 5 October 2017 (diff | hist) . . (+417) . . N Perl (Created page with "= Introduction = Quite a large software package for dealing with RNA and RNA structure = Installation = New versions of perl follow this configuraion before compiling sh...")
- 12:03, 5 October 2017 (diff | hist) . . (+210) . . N ViennaRNA (Created page with "= Introduction = Quite a large software package for dealing with RNA and RNA structure = Installation = ViennaRNA has a perl interface as well as a python interface for bot...")
- 11:53, 5 October 2017 (diff | hist) . . (+32) . . Main Page
- 14:26, 4 October 2017 (diff | hist) . . (+314) . . MicroRNAs
- 14:14, 4 October 2017 (diff | hist) . . (+203) . . N MicroRNAs (Created page with "= Introduction = = Relevant Papers = == "Predicting effective microRNA target sites in mammalian mRNAs" == By Agarwal et al eLife 2015 , link [https://www.ncbi.nlm.nih.gov/p...")
- 14:09, 4 October 2017 (diff | hist) . . (+16) . . Main Page
- 17:30, 3 October 2017 (diff | hist) . . (+79) . . Banjo
- 17:23, 3 October 2017 (diff | hist) . . (+588) . . N Banjo (Created page with "= Introduction = Banjo is Bayesian Network software with a very range of applicability in terms of data sets. It is coded in java and can be activiated on the cluster with...")
- 17:18, 3 October 2017 (diff | hist) . . (+13) . . Main Page
- 10:11, 2 October 2017 (diff | hist) . . (+2,473) . . N ChIP-Seq Top2 in Yeast 12.09.2017 (Created page with "= Introduction = September 2017 sequencing of a series of datasets listed below = Raw dataset listing = * 2017_09_12_24_INP-56915985 2017-09-12-24-INP_S24_L001_R1_001.fast...")
- 10:08, 2 October 2017 (diff | hist) . . (+40) . . Main Page
- 09:52, 29 September 2017 (diff | hist) . . (-4) . . IGSR/1000 Genomes (current)
- 09:51, 29 September 2017 (diff | hist) . . (+336) . . IGSR/1000 Genomes
- 09:48, 29 September 2017 (diff | hist) . . (+122) . . N IGSR/1000 Genomes (Created page with "= Introduction = IGSR, the Internation Genome Sample Resource provides ongoing support for the 1000 Genomes Project data.")
- 09:46, 29 September 2017 (diff | hist) . . (+24) . . Main Page
- 13:52, 21 September 2017 (diff | hist) . . (+215) . . Roary (current)
- 18:00, 20 September 2017 (diff | hist) . . (-2) . . SCAN-pc laptop
- 17:59, 20 September 2017 (diff | hist) . . (+46) . . SCAN-pc laptop
- 17:59, 20 September 2017 (diff | hist) . . (+184) . . SCAN-pc laptop
- 17:57, 20 September 2017 (diff | hist) . . (+300) . . Incorrect rebooting of marvin 19.09.2017 (current)
- 14:38, 20 September 2017 (diff | hist) . . (+288) . . Incorrect rebooting of marvin 19.09.2017
- 14:35, 20 September 2017 (diff | hist) . . (+1,418) . . N Incorrect rebooting of marvin 19.09.2017 (Created page with "= Introduction = Following a much delayed maintenance period for marvin, the latest published update from RedHat on the 10 Sept 2017 (i.e. kernel 2.6.32-696.10.2.el6.x86_64)...")
- 13:49, 20 September 2017 (diff | hist) . . (+47) . . Main Page
- 16:12, 19 September 2017 (diff | hist) . . (+1,006) . . N SCAN-pc laptop (Created page with "= Introduction = Bought by Janet Cox-Singh for use exclusively with Oxford Nanopore's MinION USB sequencing devices = Recent Behaviour (Sept 2017) = The laptop will light...")
- 14:45, 19 September 2017 (diff | hist) . . (+21) . . Main Page
- 15:45, 15 September 2017 (diff | hist) . . (+48) . . Unicycler (current)
- 15:15, 15 September 2017 (diff | hist) . . (+253) . . Unicycler
- 15:10, 15 September 2017 (diff | hist) . . (+334) . . N Unicycler (Created page with "= Introduction = Assembles microbial genomes, like other tools, but with the differences that it handle different types of short and long reads so that it can make hybrid ass...")
- 13:24, 15 September 2017 (diff | hist) . . (+17) . . Main Page
- 16:40, 14 September 2017 (diff | hist) . . (+175) . . General Command-line Tips (current)
- 10:52, 8 September 2017 (diff | hist) . . (+1) . . ChIP-Seq Top2 in Yeast
- 10:51, 8 September 2017 (diff | hist) . . (+336) . . ChIP-Seq Top2 in Yeast
- 18:05, 21 August 2017 (diff | hist) . . (+280) . . RedHat
- 17:55, 21 August 2017 (diff | hist) . . (+133) . . RedHat
- 17:53, 21 August 2017 (diff | hist) . . (+612) . . RedHat
- 23:43, 8 August 2017 (diff | hist) . . (+10) . . ChIP-Seq Top2 in Yeast
- 23:41, 8 August 2017 (diff | hist) . . (0) . . ChIP-Seq Top2 in Yeast
- 23:29, 8 August 2017 (diff | hist) . . (+1,164) . . ChIP-Seq Top2 in Yeast
- 11:34, 8 August 2017 (diff | hist) . . (-12) . . ChIP-Seq Top2 in Yeast
- 11:31, 8 August 2017 (diff | hist) . . (+1,449) . . ChIP-Seq Top2 in Yeast
- 11:20, 8 August 2017 (diff | hist) . . (0) . . ChIP-Seq Top2 in Yeast
- 23:54, 7 August 2017 (diff | hist) . . (+226) . . Macs2 (current)
- 15:40, 7 August 2017 (diff | hist) . . (+1,074) . . ChIP-Seq Top2 in Yeast
- 17:16, 4 August 2017 (diff | hist) . . (+385) . . Meryl (current)
- 17:07, 4 August 2017 (diff | hist) . . (+6,254) . . N Meryl (Created page with "= Introduction = This is a kmer coounting program, part of a larger suite of tools at kmer.sourceforge.net It's by Brian Walenz of Kanu (MinION genome assembly fame). = Hel...")
- 16:59, 4 August 2017 (diff | hist) . . (+13) . . Main Page
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