User contributions
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- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Psqs.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Psnc.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Sdl.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Psgcc.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Sascha.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Ovrep.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Pbsc.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Pbsqb.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Pbgcc.png (Uploaded with SimpleBatchUpload) (current)
- 01:37, 8 May 2017 (diff | hist) . . (0) . . N File:Pbsqg.png (Uploaded with SimpleBatchUpload) (current)
- 01:30, 8 May 2017 (diff | hist) . . (0) . . N File:Ascii.png (current)
- 01:28, 8 May 2017 (diff | hist) . . (+6,858) . . N Quality Control and Preprocessing Talk (Created page with "Quality control and data pre-processing = Contents = * Data formats : – Fasta and Fastq formats : – Sequence quality encoding * Quality Control (QC) :– Evaluation of s...")
- 01:27, 8 May 2017 (diff | hist) . . (+6,858) . . N Quality Control Preprocessing Talk (Created page with "Quality control and data pre-processing = Contents = * Data formats : – Fasta and Fastq formats : – Sequence quality encoding * Quality Control (QC) :– Evaluation of s...") (current)
- 01:27, 8 May 2017 (diff | hist) . . (+6,858) . . N Quality and Control Preprocessing Talk (Created page with "Quality control and data pre-processing = Contents = * Data formats : – Fasta and Fastq formats : – Sequence quality encoding * Quality Control (QC) :– Evaluation of s...") (current)
- 01:16, 8 May 2017 (diff | hist) . . (+27) . . Quality of Mapping Exercise
- 21:22, 7 May 2017 (diff | hist) . . (-1) . . I2rda Course Cheatsheet
- 19:34, 7 May 2017 (diff | hist) . . (+398) . . I2rda Course Cheatsheet
- 19:26, 7 May 2017 (diff | hist) . . (-16) . . Quality of Mapping Exercise
- 19:23, 7 May 2017 (diff | hist) . . (0) . . Quality of Mapping Exercise
- 19:15, 7 May 2017 (diff | hist) . . (0) . . Quality of Mapping Exercise
- 19:14, 7 May 2017 (diff | hist) . . (+312) . . Quality of Mapping Exercise
- 19:13, 7 May 2017 (diff | hist) . . (+92) . . I2rda Course Cheatsheet
- 19:12, 7 May 2017 (diff | hist) . . (+164) . . I2rda Course Cheatsheet
- 19:10, 7 May 2017 (diff | hist) . . (+39) . . I2rda Course Cheatsheet
- 19:09, 7 May 2017 (diff | hist) . . (-1) . . I2rda Course Cheatsheet
- 19:08, 7 May 2017 (diff | hist) . . (+462) . . I2rda Course Cheatsheet
- 19:05, 7 May 2017 (diff | hist) . . (-1) . . I2rda Course Cheatsheet
- 19:04, 7 May 2017 (diff | hist) . . (+33) . . I2rda Course Cheatsheet
- 19:02, 7 May 2017 (diff | hist) . . (-1,673) . . I2rda Course Cheatsheet
- 18:56, 7 May 2017 (diff | hist) . . (+213) . . I2rda Course Cheatsheet
- 18:54, 7 May 2017 (diff | hist) . . (-16,925) . . I2rda Course Cheatsheet
- 18:44, 7 May 2017 (diff | hist) . . (+23,298) . . N I2rda Course Cheatsheet (Created page with "= The Command-line (shell) = The real power of Linux/Unix systems is the command line. * Many programs and facilities are available through graphical options on Linux, but a...")
- 18:26, 7 May 2017 (diff | hist) . . (+447) . . Quality of Mapping Exercise
- 18:21, 7 May 2017 (diff | hist) . . (0) . . m Quality of Mapping Exercise (Rf moved page Quality of Mapping to Quality of Mapping Exercise)
- 18:21, 7 May 2017 (diff | hist) . . (+41) . . N Quality of Mapping (Rf moved page Quality of Mapping to Quality of Mapping Exercise) (current)
- 18:10, 7 May 2017 (diff | hist) . . (+370) . . Intro to RNA-Seq Data Analysis Course
- 17:51, 7 May 2017 (diff | hist) . . (+27) . . Tophat (current)
- 17:49, 7 May 2017 (diff | hist) . . (+17) . . Main Page
- 17:47, 7 May 2017 (diff | hist) . . (+947) . . Tophat
- 17:35, 7 May 2017 (diff | hist) . . (+372) . . N Tophat (Created page with "Introduction = The well known sloice-aware aligner or mapper, now being phased out in favour of HISAT2 = Usage = module load tophat This will load the latest version (2.1...")
- 17:21, 7 May 2017 (diff | hist) . . (+41) . . Mapping to Reference Exercise
- 17:18, 7 May 2017 (diff | hist) . . (+2,370) . . Mapping to Reference Exercise
- 15:52, 7 May 2017 (diff | hist) . . (+99) . . Mapping to Reference Exercise
- 15:52, 7 May 2017 (diff | hist) . . (+2,460) . . Mapping to Reference (current)
- 15:13, 7 May 2017 (diff | hist) . . (+165) . . Intro to RNA-Seq Data Analysis Course
- 14:16, 7 May 2017 (diff | hist) . . (+84) . . Intro to RNA-Seq Data Analysis Course
- 14:12, 7 May 2017 (diff | hist) . . (+10) . . Intro to RNA-Seq Data Analysis Course
- 14:11, 7 May 2017 (diff | hist) . . (+304) . . Intro to RNA-Seq Data Analysis Course
- 14:07, 7 May 2017 (diff | hist) . . (-894) . . Intro to RNA-Seq Data Analysis Course
- 13:43, 7 May 2017 (diff | hist) . . (+2,891) . . Intro to RNA-Seq Data Analysis Course
- 13:22, 7 May 2017 (diff | hist) . . (+4,181) . . N Mapping to Reference Talk (Created page with "Mapping to a reference genome = Contents = * Overview * Mapping process: Algorithms and tools * Mapping output: SAM/BAM specification Mapping to a reference genome U Trived...")
- 19:52, 6 May 2017 (diff | hist) . . (+32) . . N I2rda mqx (Rf moved page I2rda mqx to Quality of Mapping) (current)
- 19:52, 6 May 2017 (diff | hist) . . (0) . . m Quality of Mapping Exercise (Rf moved page I2rda mqx to Quality of Mapping)
- 16:48, 6 May 2017 (diff | hist) . . (+6) . . Mapping to Reference Exercise
- 16:40, 6 May 2017 (diff | hist) . . (-54) . . Mapping to Reference Exercise
- 16:17, 6 May 2017 (diff | hist) . . (+2,433) . . N Mapping to Reference Exercise (Created page with "= Aims = Mapping to a reference genome is a vital step to generate counts and do differential gene expression thereafter. For RNA-Seq data it is important to choose an aligne...")
- 16:35, 5 May 2017 (diff | hist) . . (+96) . . m Quality Control and Preprocessing Exercise
- 16:33, 5 May 2017 (diff | hist) . . (+36) . . Quality Control and Preprocessing Exercise
- 15:05, 5 May 2017 (diff | hist) . . (+400) . . Quality Control and Preprocessing Exercise
- 14:30, 5 May 2017 (diff | hist) . . (+287) . . Quality Control and Preprocessing Exercise
- 14:25, 5 May 2017 (diff | hist) . . (+1) . . Ea-utils (current)
- 14:23, 5 May 2017 (diff | hist) . . (+681) . . Ea-utils
- 13:36, 5 May 2017 (diff | hist) . . (+4,220) . . N Ea-utils (Created page with "= Usage of Cluster= * Cluster Manual * Why a Queue Manager? * Available Software = Documented Programs = The following can be seen as extra notes referring to th...")
- 13:35, 5 May 2017 (diff | hist) . . (+16) . . Main Page
- 12:48, 5 May 2017 (diff | hist) . . (-165) . . Quality Control and Preprocessing Exercise
- 09:47, 5 May 2017 (diff | hist) . . (+7,908) . . N Differential Expression Talk (Created page with "07 Differential expression analysis = Goals = Three overall: Primarily, it's about: * Identify differentially expressed genes in two or more conditions (e.g. normal v cance...")
- 15:42, 4 May 2017 (diff | hist) . . (+1,013) . . Key Aspects of R Exercise
- 15:22, 4 May 2017 (diff | hist) . . (0) . . m Key Aspects of R Exercise (Rf moved page Key Aspects of R to Key Aspects of R Exercise)
- 15:22, 4 May 2017 (diff | hist) . . (+39) . . N Key Aspects of R (Rf moved page Key Aspects of R to Key Aspects of R Exercise) (current)
- 15:22, 4 May 2017 (diff | hist) . . (0) . . m Key Aspects of R Exercise (Rf moved page I2rda karx to Key Aspects of R)
- 15:22, 4 May 2017 (diff | hist) . . (+30) . . N I2rda karx (Rf moved page I2rda karx to Key Aspects of R) (current)
- 15:12, 4 May 2017 (diff | hist) . . (+551) . . Differential Expression Exercise
- 14:48, 4 May 2017 (diff | hist) . . (+521) . . Differential Expression Exercise
- 14:40, 4 May 2017 (diff | hist) . . (0) . . m Estimating Gene Count Exercise (Rf moved page I2rda egcx to Estimating Gene Count Exercise over redirect)
- 14:40, 4 May 2017 (diff | hist) . . (+44) . . N I2rda egcx (Rf moved page I2rda egcx to Estimating Gene Count Exercise over redirect) (current)
- 14:40, 4 May 2017 (diff | hist) . . (0) . . m Functional Analysis Exercise (Rf moved page I2rda fax to Functional Analysis Exercise over redirect)
- 14:40, 4 May 2017 (diff | hist) . . (+42) . . N I2rda fax (Rf moved page I2rda fax to Functional Analysis Exercise over redirect) (current)
- 14:24, 4 May 2017 (diff | hist) . . (+76) . . N Intro to RNA-Seq Data Analysis Course (Created page with "= Organizations Details = = Layout of the Day = = Access to the Machines =")
- 14:12, 4 May 2017 (diff | hist) . . (0) . . m Differential Expression Exercise (Rf moved page I2rda dex to Differential Expression Exercise over redirect)
- 14:12, 4 May 2017 (diff | hist) . . (+46) . . N I2rda dex (Rf moved page I2rda dex to Differential Expression Exercise over redirect) (current)
- 14:00, 4 May 2017 (diff | hist) . . (0) . . m Quality Control and Preprocessing Exercise (Rf moved page Quality Control and Processing Exercise to Quality Control and Preprocessing Exercise)
- 14:00, 4 May 2017 (diff | hist) . . (+56) . . N Quality Control and Processing Exercise (Rf moved page Quality Control and Processing Exercise to Quality Control and Preprocessing Exercise) (current)
- 13:59, 4 May 2017 (diff | hist) . . (0) . . m Quality Control and Preprocessing Exercise (Rf moved page Quality Control and Processing Talk to Quality Control and Processing Exercise)
- 13:59, 4 May 2017 (diff | hist) . . (+53) . . N Quality Control and Processing Talk (Rf moved page Quality Control and Processing Talk to Quality Control and Processing Exercise) (current)
- 13:58, 4 May 2017 (diff | hist) . . (0) . . m Quality Control and Preprocessing Exercise (Rf moved page Qcpx to Quality Control and Processing Talk)
- 13:58, 4 May 2017 (diff | hist) . . (+49) . . N Qcpx (Rf moved page Qcpx to Quality Control and Processing Talk) (current)
- 13:56, 4 May 2017 (diff | hist) . . (0) . . m Functional Analysis Exercise (Rf moved page Functional Analysis Exercise to I2rda fax)
- 13:55, 4 May 2017 (diff | hist) . . (0) . . m Differential Expression Exercise (Rf moved page Differential Expression Exercise to I2rda dex)
- 13:54, 4 May 2017 (diff | hist) . . (0) . . m Estimating Gene Count Exercise (Rf moved page Estimating Gene Count Exercise to I2rda egcx)
- 13:53, 4 May 2017 (diff | hist) . . (0) . . m Quality Control and Preprocessing Exercise (Rf moved page Quality Control and Preprocessing to Qcpx)
- 13:53, 4 May 2017 (diff | hist) . . (+18) . . N Quality Control and Preprocessing (Rf moved page Quality Control and Preprocessing to Qcpx) (current)
- 13:52, 4 May 2017 (diff | hist) . . (0) . . m I2rda m2rx (Rf moved page Mapping to Reference to I2rda m2rx) (current)
- 13:52, 4 May 2017 (diff | hist) . . (+24) . . N Mapping to Reference (Rf moved page Mapping to Reference to I2rda m2rx)
- 13:52, 4 May 2017 (diff | hist) . . (0) . . m Quality of Mapping Exercise (Rf moved page Mapping Quality Exercise to I2rda mqx)
- 13:52, 4 May 2017 (diff | hist) . . (+23) . . N Mapping Quality Exercise (Rf moved page Mapping Quality Exercise to I2rda mqx) (current)
- 13:51, 4 May 2017 (diff | hist) . . (0) . . m Key Aspects of R Exercise (Rf moved page Key Aspects of using R to I2rda karx)
- 13:51, 4 May 2017 (diff | hist) . . (+24) . . N Key Aspects of using R (Rf moved page Key Aspects of using R to I2rda karx) (current)
- 13:13, 2 May 2017 (diff | hist) . . (+4) . . I2rdalinks (current)
- 13:11, 2 May 2017 (diff | hist) . . (+453) . . N I2rdalinks (Created page with "= Introduction = One day is a very short time to deal with such a big topic as RNA-Seq Data Analysis, so this is page of links which attendees can view later in order to supp...")
- 17:51, 28 April 2017 (diff | hist) . . (+2,440) . . Samtools
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