User contributions
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- 13:43, 7 May 2017 (diff | hist) . . (+2,891) . . Intro to RNA-Seq Data Analysis Course
- 13:22, 7 May 2017 (diff | hist) . . (+4,181) . . N Mapping to Reference Talk (Created page with "Mapping to a reference genome = Contents = * Overview * Mapping process: Algorithms and tools * Mapping output: SAM/BAM specification Mapping to a reference genome U Trived...")
- 19:52, 6 May 2017 (diff | hist) . . (+32) . . N I2rda mqx (Rf moved page I2rda mqx to Quality of Mapping) (current)
- 19:52, 6 May 2017 (diff | hist) . . (0) . . m Quality of Mapping Exercise (Rf moved page I2rda mqx to Quality of Mapping)
- 16:48, 6 May 2017 (diff | hist) . . (+6) . . Mapping to Reference Exercise
- 16:40, 6 May 2017 (diff | hist) . . (-54) . . Mapping to Reference Exercise
- 16:17, 6 May 2017 (diff | hist) . . (+2,433) . . N Mapping to Reference Exercise (Created page with "= Aims = Mapping to a reference genome is a vital step to generate counts and do differential gene expression thereafter. For RNA-Seq data it is important to choose an aligne...")
- 16:35, 5 May 2017 (diff | hist) . . (+96) . . m Quality Control and Preprocessing Exercise
- 16:33, 5 May 2017 (diff | hist) . . (+36) . . Quality Control and Preprocessing Exercise
- 15:05, 5 May 2017 (diff | hist) . . (+400) . . Quality Control and Preprocessing Exercise
- 14:30, 5 May 2017 (diff | hist) . . (+287) . . Quality Control and Preprocessing Exercise
- 14:25, 5 May 2017 (diff | hist) . . (+1) . . Ea-utils (current)
- 14:23, 5 May 2017 (diff | hist) . . (+681) . . Ea-utils
- 13:36, 5 May 2017 (diff | hist) . . (+4,220) . . N Ea-utils (Created page with "= Usage of Cluster= * Cluster Manual * Why a Queue Manager? * Available Software = Documented Programs = The following can be seen as extra notes referring to th...")
- 13:35, 5 May 2017 (diff | hist) . . (+16) . . Main Page
- 12:48, 5 May 2017 (diff | hist) . . (-165) . . Quality Control and Preprocessing Exercise
- 09:47, 5 May 2017 (diff | hist) . . (+7,908) . . N Differential Expression Talk (Created page with "07 Differential expression analysis = Goals = Three overall: Primarily, it's about: * Identify differentially expressed genes in two or more conditions (e.g. normal v cance...")
- 15:42, 4 May 2017 (diff | hist) . . (+1,013) . . Key Aspects of R Exercise
- 15:22, 4 May 2017 (diff | hist) . . (0) . . m Key Aspects of R Exercise (Rf moved page Key Aspects of R to Key Aspects of R Exercise)
- 15:22, 4 May 2017 (diff | hist) . . (+39) . . N Key Aspects of R (Rf moved page Key Aspects of R to Key Aspects of R Exercise) (current)
- 15:22, 4 May 2017 (diff | hist) . . (0) . . m Key Aspects of R Exercise (Rf moved page I2rda karx to Key Aspects of R)
- 15:22, 4 May 2017 (diff | hist) . . (+30) . . N I2rda karx (Rf moved page I2rda karx to Key Aspects of R) (current)
- 15:12, 4 May 2017 (diff | hist) . . (+551) . . Differential Expression Exercise
- 14:48, 4 May 2017 (diff | hist) . . (+521) . . Differential Expression Exercise
- 14:40, 4 May 2017 (diff | hist) . . (0) . . m Estimating Gene Count Exercise (Rf moved page I2rda egcx to Estimating Gene Count Exercise over redirect)
- 14:40, 4 May 2017 (diff | hist) . . (+44) . . N I2rda egcx (Rf moved page I2rda egcx to Estimating Gene Count Exercise over redirect) (current)
- 14:40, 4 May 2017 (diff | hist) . . (0) . . m Functional Analysis Exercise (Rf moved page I2rda fax to Functional Analysis Exercise over redirect)
- 14:40, 4 May 2017 (diff | hist) . . (+42) . . N I2rda fax (Rf moved page I2rda fax to Functional Analysis Exercise over redirect) (current)
- 14:24, 4 May 2017 (diff | hist) . . (+76) . . N Intro to RNA-Seq Data Analysis Course (Created page with "= Organizations Details = = Layout of the Day = = Access to the Machines =")
- 14:12, 4 May 2017 (diff | hist) . . (0) . . m Differential Expression Exercise (Rf moved page I2rda dex to Differential Expression Exercise over redirect)
- 14:12, 4 May 2017 (diff | hist) . . (+46) . . N I2rda dex (Rf moved page I2rda dex to Differential Expression Exercise over redirect) (current)
- 14:00, 4 May 2017 (diff | hist) . . (0) . . m Quality Control and Preprocessing Exercise (Rf moved page Quality Control and Processing Exercise to Quality Control and Preprocessing Exercise)
- 14:00, 4 May 2017 (diff | hist) . . (+56) . . N Quality Control and Processing Exercise (Rf moved page Quality Control and Processing Exercise to Quality Control and Preprocessing Exercise) (current)
- 13:59, 4 May 2017 (diff | hist) . . (0) . . m Quality Control and Preprocessing Exercise (Rf moved page Quality Control and Processing Talk to Quality Control and Processing Exercise)
- 13:59, 4 May 2017 (diff | hist) . . (+53) . . N Quality Control and Processing Talk (Rf moved page Quality Control and Processing Talk to Quality Control and Processing Exercise) (current)
- 13:58, 4 May 2017 (diff | hist) . . (0) . . m Quality Control and Preprocessing Exercise (Rf moved page Qcpx to Quality Control and Processing Talk)
- 13:58, 4 May 2017 (diff | hist) . . (+49) . . N Qcpx (Rf moved page Qcpx to Quality Control and Processing Talk) (current)
- 13:56, 4 May 2017 (diff | hist) . . (0) . . m Functional Analysis Exercise (Rf moved page Functional Analysis Exercise to I2rda fax)
- 13:55, 4 May 2017 (diff | hist) . . (0) . . m Differential Expression Exercise (Rf moved page Differential Expression Exercise to I2rda dex)
- 13:54, 4 May 2017 (diff | hist) . . (0) . . m Estimating Gene Count Exercise (Rf moved page Estimating Gene Count Exercise to I2rda egcx)
- 13:53, 4 May 2017 (diff | hist) . . (0) . . m Quality Control and Preprocessing Exercise (Rf moved page Quality Control and Preprocessing to Qcpx)
- 13:53, 4 May 2017 (diff | hist) . . (+18) . . N Quality Control and Preprocessing (Rf moved page Quality Control and Preprocessing to Qcpx) (current)
- 13:52, 4 May 2017 (diff | hist) . . (0) . . m I2rda m2rx (Rf moved page Mapping to Reference to I2rda m2rx) (current)
- 13:52, 4 May 2017 (diff | hist) . . (+24) . . N Mapping to Reference (Rf moved page Mapping to Reference to I2rda m2rx)
- 13:52, 4 May 2017 (diff | hist) . . (0) . . m Quality of Mapping Exercise (Rf moved page Mapping Quality Exercise to I2rda mqx)
- 13:52, 4 May 2017 (diff | hist) . . (+23) . . N Mapping Quality Exercise (Rf moved page Mapping Quality Exercise to I2rda mqx) (current)
- 13:51, 4 May 2017 (diff | hist) . . (0) . . m Key Aspects of R Exercise (Rf moved page Key Aspects of using R to I2rda karx)
- 13:51, 4 May 2017 (diff | hist) . . (+24) . . N Key Aspects of using R (Rf moved page Key Aspects of using R to I2rda karx) (current)
- 13:13, 2 May 2017 (diff | hist) . . (+4) . . I2rdalinks (current)
- 13:11, 2 May 2017 (diff | hist) . . (+453) . . N I2rdalinks (Created page with "= Introduction = One day is a very short time to deal with such a big topic as RNA-Seq Data Analysis, so this is page of links which attendees can view later in order to supp...")
- 17:51, 28 April 2017 (diff | hist) . . (+2,440) . . Samtools
- 00:07, 28 April 2017 (diff | hist) . . (+103) . . Qualimap (current)
- 00:01, 28 April 2017 (diff | hist) . . (+937) . . Qualimap
- 15:40, 26 April 2017 (diff | hist) . . (+185) . . Qualimap
- 15:36, 26 April 2017 (diff | hist) . . (+234) . . N Qualimap (Created page with "= Introduction = Inspecting bam files for quality = Installation = Has a number of dependencies: * optparse (available from CRAN) * NOISeq, Repitools, Rsamtools, GenomicFe...")
- 15:09, 26 April 2017 (diff | hist) . . (+217) . . Samtools
- 12:00, 26 April 2017 (diff | hist) . . (+16) . . Main Page
- 23:38, 19 April 2017 (diff | hist) . . (+966) . . N Hdi2u S25 (Created page with "= Accessing a running program or working with others interactively = * If you just run a job and then close down the terminal you ran it from, normally the job will be termin...") (current)
- 23:38, 19 April 2017 (diff | hist) . . (+538) . . N Hdi2u S24 (Created page with "= Processes = * Sometimes a command or program you run in the terminal goes on too long, or is obviously doing something you did not plan. * If there is no obvious way (such...") (current)
- 23:38, 19 April 2017 (diff | hist) . . (+385) . . N Hdi2u S23 (Created page with "= Environment Variables = * We have seen that the way commands run can be modified by the options passed on the command line. * One of the most important variables is PATH. T...") (current)
- 23:37, 19 April 2017 (diff | hist) . . (+793) . . N Hdi2u S22 (Created page with "* Try the command: grep "^DE" hsy14768.embl and grep -x "DE.*" hsy14768.embl * What are the <code>^</code> symbol and the <code>-x</code> parameter in these commands doing? *...") (current)
- 23:37, 19 April 2017 (diff | hist) . . (+830) . . N Hdi2u S21 (Created page with "= Grep = * grep stands for "global regular expression print" * you use this command to search for text patterns in a file, for example, Linux's mini-dicitonary. grep "adge"...") (current)
- 23:36, 19 April 2017 (diff | hist) . . (+262) . . N Hdi2u S20 (Created page with "= Piping output between applications = * <code>|</code>, often called an operator because it's so powerful * not always easy to find on the keyboard == Exercise == * "Pipe" t...") (current)
- 23:36, 19 April 2017 (diff | hist) . . (+1,235) . . N Hdi2u S19 (Created page with "= Removing files and directories = * The key difference between deleting something from the command line and using the graphical file browser is that in the first case the fi...") (current)
- 23:36, 19 April 2017 (diff | hist) . . (+352) . . N Hdi2u S18 (Created page with "= Linking to files = * copying big files can exhaust hard disk quickly. * You can instead create a link to it with the <code>ln -s</code> command. ln -s current.file linktoc...") (current)
- 23:35, 19 April 2017 (diff | hist) . . (+1,381) . . N Hdi2u S17 (Created page with "= Copying files and directories = * The basic command used to copy files using the command line is <code>cp</code>. * At a minimum, you must specify two arguments: the name o...") (current)
- 23:35, 19 April 2017 (diff | hist) . . (+1,425) . . N Hdi2u S16 (Created page with "== Getting by in only normal mode == * movement keys, "w" jump via start of words; "e" jump via ends; "fc" jump to next c * "0" for start of line, "A" for end of line and int...") (current)
- 23:35, 19 April 2017 (diff | hist) . . (+1,203) . . N Hdi2u S15 (Created page with "= Text editing = * There are very many text editors, but one of the most powerful and dependable is <code>vi</code>. * It has a steep but tiny learning curve, which we hope t...") (current)
- 23:34, 19 April 2017 (diff | hist) . . (+648) . . N Hdi2u S14 (Created page with "== Remember the man pages == There are many command line options available for each of the above commands, as well as functionality we do not cover here. To read more about th...") (current)
- 23:34, 19 April 2017 (diff | hist) . . (+1,212) . . N Hdi2u S13 (Created page with "= Reading text files = * These are useful when you want to look at the contents of a file, but not edit it. * Among the most common of these commands are <code>cat</code>, <c...") (current)
- 23:33, 19 April 2017 (diff | hist) . . (+1,249) . . N Hdi2u S12 (Created page with "= Command history = * This is another very handy tool for saving typing * Previous commands you have used are stored in your "history". * You use the up and down arrow keys t...") (current)
- 23:32, 19 April 2017 (diff | hist) . . (+1,265) . . N Hdi2u S11 (Created page with "= Tab completion = * Fear of the command line often means, fear of typing too much. Everybody fears this, so there are tools. * Tab completion is probably the most important...") (current)
- 23:32, 19 April 2017 (diff | hist) . . (+1,271) . . N Hdi2u S10 (Created page with "= Changing directories = * Directories are the same as folders. In linux "directory" is more common. * Directories within directories are called subdirectories" * The command...") (current)
- 23:31, 19 April 2017 (diff | hist) . . (+908) . . N Hdi2u S09 (Created page with "= Linux shortcut symbols = * We've seen <code>*</code> is a special symbol, and how useful it can be. * There are more however: * <code>?</code> matches a single character l...") (current)
- 23:30, 19 April 2017 (diff | hist) . . (+765) . . N Hdi2u S08 (Created page with "= Basic Linux tips for filenames = * Linux does not deal well with spaces in filenames * Expect problems when transferring files from Windows. * Everything is case sensitive...") (current)
- 23:30, 19 April 2017 (diff | hist) . . (+440) . . N Hdi2u S07 (Created page with "Now try: man ls * Did you think you knew this command already? * What does the <code>-h</code> option do? What about the <code>-a</code> option? What would running <code>ls...") (current)
- 23:29, 19 April 2017 (diff | hist) . . (+42) . . Hdi2u S06 (current)
- 23:28, 19 April 2017 (diff | hist) . . (+854) . . N Hdi2u S06 (Created page with "= Learning about Linux commands = * This is a continuous and very important activity * Linux has a large and comprehensive documentation system called <code>man</code> * Linu...")
- 23:28, 19 April 2017 (diff | hist) . . (+883) . . N Hdi2u S05 (Created page with "== Answers == * You get the hidden files * the <code>-l</code> is the long listing * this file is empty, it has no content. * by default ls will list files anywhere it can fi...") (current)
- 23:27, 19 April 2017 (diff | hist) . . (+972) . . N Hdi2u S04 (Created page with "= Listing files and directories = * <code>ls</code> is the most common command of all. It lists files and folders in your current location. * By default it requires no argume...") (current)
- 23:27, 19 April 2017 (diff | hist) . . (+928) . . N Hdi2u S03 (Created page with "= Navigating the command line = * Bioinformatics tools can have very many options * They also can be combined with many others, leading to very long command-line. * You do no...") (current)
- 23:26, 19 April 2017 (diff | hist) . . (+1,096) . . N Hdi2u S02 (Created page with "= Anatomy of a Command = <command> <options/parameters> <arguments> * <command> what do I want to do? * <options/parameters> how do I want to do it? * <arguments>, on what...") (current)
- 23:26, 19 April 2017 (diff | hist) . . (-1,098) . . Hdi2u S01 (current)
- 23:25, 19 April 2017 (diff | hist) . . (-22,344) . . Hdi2u S01
- 23:25, 19 April 2017 (diff | hist) . . (+24,146) . . N Hdi2u S01 (Created page with "= The Command-line (shell) = The real power of Linux/Unix systems is the command line. * Many programs and facilities are available through graphical options on Linux, but a...")
- 23:24, 19 April 2017 (diff | hist) . . (+24,146) . . N Hdi2u S00 (n) (current)
- 22:47, 19 April 2017 (diff | hist) . . (+2,967) . . N Hdi2u intro (Created page with "= Course schedule = * This is a cut-down version of 1 day course. * History and theory has been left out * Scripting is excluded (although plenty of one-liners) * Maximise pr...") (current)
- 17:34, 19 April 2017 (diff | hist) . . (+3,839) . . N Hdi2u dirorg exercise (n) (current)
- 14:45, 19 April 2017 (diff | hist) . . (+1,497) . . Hdi2u rendertotsv exercise (current)
- 14:37, 19 April 2017 (diff | hist) . . (+4,589) . . N Hdi2u rendertotsv exercise (n)
- 14:34, 19 April 2017 (diff | hist) . . (-1,969) . . Hdi2u commandbased exercises (current)
- 14:30, 19 April 2017 (diff | hist) . . (+26,115) . . N Hdi2u commandbased exercises (Created page with "= The Command-line (shell) = The real power of Linux/Unix systems is the command line. * Many programs and facilities are available through graphical options on Linux, but a...")
- 14:29, 19 April 2017 (diff | hist) . . (+30) . . Main Page
- 22:02, 17 April 2017 (diff | hist) . . (+321) . . One-liners (current)
- 21:42, 17 April 2017 (diff | hist) . . (+250) . . One-liners
- 00:09, 15 April 2017 (diff | hist) . . (-2,136) . . Biolinux Source course (current)
- 23:55, 14 April 2017 (diff | hist) . . (-9,484) . . Biolinux Source course
- 18:53, 14 April 2017 (diff | hist) . . (-601,958) . . Biolinux Source course
- 18:51, 14 April 2017 (diff | hist) . . (+430) . . Course itself (current)
- 17:21, 14 April 2017 (diff | hist) . . (0) . . Main Page
- 17:20, 14 April 2017 (diff | hist) . . (+29) . . Main Page
- 17:19, 14 April 2017 (diff | hist) . . (+785,319) . . N Biolinux Source course (Created page with "<div id="page1-div" style="position:relative;width:892px;height:1263px;"> '''Introduction to''' '''For Bio-Linux 8''' '''January 2015''' Website[http://neb...")
- 15:00, 13 April 2017 (diff | hist) . . (+251) . . FASTQC and MultiQC
- 14:51, 13 April 2017 (diff | hist) . . (+2) . . FASTQC and MultiQC
- 14:50, 13 April 2017 (diff | hist) . . (+8,348) . . FASTQC and MultiQC
- 14:50, 13 April 2017 (diff | hist) . . (-7,948) . . FASTQC and MultiQC (Replaced content with " No Name [/home/nutria], b1, wiki |Introduction |FastQC = . |fastqc's help file |MultiQC |multiqc's help file")
- 14:43, 13 April 2017 (diff | hist) . . (+8) . . FASTQC and MultiQC
- 18:44, 12 April 2017 (diff | hist) . . (+253) . . Command Line Exercises (current)
- 18:29, 12 April 2017 (diff | hist) . . (+1,408) . . Command Line Exercises
- 17:58, 12 April 2017 (diff | hist) . . (+16) . . Command Line Exercises
- 17:56, 12 April 2017 (diff | hist) . . (+630) . . Command Line Exercises
- 17:55, 12 April 2017 (diff | hist) . . (0) . . N Command Line Exercises (Created blank page)
- 17:49, 12 April 2017 (diff | hist) . . (+29) . . Main Page
- 16:07, 10 April 2017 (diff | hist) . . (+12,822) . . N Hdi2u session 1 (Created page with "= hdi2u Practice Session 1 = == The command '''ls''' lists files and subdirectories in a directory == By default this command will list the filenames of the files in your cu...") (current)
- 16:00, 10 April 2017 (diff | hist) . . (+172) . . Main Page
- 13:23, 9 April 2017 (diff | hist) . . (+980) . . MinION Coverage sensitivity analysis (s2) (current)
- 13:05, 9 April 2017 (diff | hist) . . (+794) . . MinION Coverage sensitivity analysis (s2)
- 00:29, 9 April 2017 (diff | hist) . . (+2,464) . . N Quality Control and Preprocessing Exercise (s1)
- 00:26, 9 April 2017 (diff | hist) . . (+40) . . Main Page
- 00:23, 9 April 2017 (diff | hist) . . (+2,433) . . N I2rda m2rx (s1)
- 00:18, 9 April 2017 (diff | hist) . . (+27) . . Main Page
- 00:11, 9 April 2017 (diff | hist) . . (+1) . . Main Page
- 00:11, 9 April 2017 (diff | hist) . . (+5,415) . . N Quality of Mapping Exercise (s1)
- 23:57, 8 April 2017 (diff | hist) . . (+30) . . Main Page
- 23:49, 8 April 2017 (diff | hist) . . (+13,033) . . N Key Aspects of R Exercise (s1)
- 23:43, 8 April 2017 (diff | hist) . . (-55) . . Main Page
- 23:32, 8 April 2017 (diff | hist) . . (+1) . . Estimating Gene Count Exercise (s2)
- 23:31, 8 April 2017 (diff | hist) . . (+2) . . Estimating Gene Count Exercise (s2)
- 23:30, 8 April 2017 (diff | hist) . . (+38) . . Estimating Gene Count Exercise (s2)
- 23:26, 8 April 2017 (diff | hist) . . (-96) . . Estimating Gene Count Exercise (s2)
- 23:25, 8 April 2017 (diff | hist) . . (+3,405) . . Estimating Gen Count Exercise (s2) (current)
- 23:22, 8 April 2017 (diff | hist) . . (+1) . . Main Page
- 23:22, 8 April 2017 (diff | hist) . . (0) . . m Estimating Gene Count Exercise (Rf moved page Estimating Gen Count Exercise to Estimating Gene Count Exercise)
- 23:22, 8 April 2017 (diff | hist) . . (+44) . . N Estimating Gen Count Exercise (Rf moved page Estimating Gen Count Exercise to Estimating Gene Count Exercise)
- 23:21, 8 April 2017 (diff | hist) . . (-1) . . Main Page
- 23:20, 8 April 2017 (diff | hist) . . (+3,545) . . N Estimating Gene Count Exercise (s1)
- 23:15, 8 April 2017 (diff | hist) . . (-63) . . Main Page
- 23:08, 8 April 2017 (diff | hist) . . (+1) . . Differential Expression Exercise (s2)
- 23:06, 8 April 2017 (diff | hist) . . (+160) . . Differential Expression Exercise (s2)
- 22:58, 8 April 2017 (diff | hist) . . (-49) . . m Differential Expression Exercise (s2)
- 22:47, 8 April 2017 (diff | hist) . . (+15,834) . . N Differential Expression Exercise (s1)
- 22:37, 8 April 2017 (diff | hist) . . (+60) . . Functional Analysis Exercise (s2)
- 22:29, 8 April 2017 (diff | hist) . . (+11) . . m Functional Analysis Exercise (s2)
- 22:25, 8 April 2017 (diff | hist) . . (+4,730) . . Functional Analysis Exercise (start)
- 22:14, 8 April 2017 (diff | hist) . . (+4) . . N Functional Analysis Exercise (Created page with "This")
- 22:11, 8 April 2017 (diff | hist) . . (+260) . . Main Page
- 17:01, 8 April 2017 (diff | hist) . . (+31) . . m Bwa (add)
- 18:24, 7 April 2017 (diff | hist) . . (+461) . . MinION Coverage sensitivity analysis
- 15:12, 6 April 2017 (diff | hist) . . (+15) . . Canu
- 15:04, 6 April 2017 (diff | hist) . . (+946) . . Canu
- 14:51, 6 April 2017 (diff | hist) . . (+13) . . Canu
- 14:50, 6 April 2017 (diff | hist) . . (+105) . . Canu
- 14:25, 6 April 2017 (diff | hist) . . (+181) . . Canu
- 15:03, 5 April 2017 (diff | hist) . . (+102) . . Samtools
- 15:59, 3 April 2017 (diff | hist) . . (+842) . . N Biotime machine (Created page with "= Memory-style errors = These used to happen quite often with marvin. nutria@biotime:/mnt/rdrive/Bioinformatics$ Message from syslogd@biotime at Apr 3 14:56:59 ... kern...")
- 15:14, 3 April 2017 (diff | hist) . . (+22) . . Main Page
- 14:11, 3 April 2017 (diff | hist) . . (+845) . . Backups
- 13:12, 3 April 2017 (diff | hist) . . (+3,178) . . Backups
- 13:04, 3 April 2017 (diff | hist) . . (+479) . . Backups
- 11:08, 3 April 2017 (diff | hist) . . (+155) . . Home directories max-out incident 28.11.2016 (current)
- 15:06, 2 April 2017 (diff | hist) . . (+162,413) . . N Pandoc modified manual (Created page with "__TOC__ = Synopsis = <code>pandoc</code> [''options''] [''input-file'']… = Description = Pandoc is a [https://www.haskell.org Haskell] library for converting from on...") (current)
- 15:06, 2 April 2017 (diff | hist) . . (+29) . . Main Page
- 16:09, 30 March 2017 (diff | hist) . . (+1) . . CallSNPs.py
- 15:44, 30 March 2017 (diff | hist) . . (+186) . . CallSNPs.py
- 15:39, 30 March 2017 (diff | hist) . . (+26) . . CallSNPs.py
- 15:37, 30 March 2017 (diff | hist) . . (+55) . . CallSNPs.py
- 15:32, 30 March 2017 (diff | hist) . . (+81) . . CallSNPs.py
- 15:19, 30 March 2017 (diff | hist) . . (+296) . . CallSNPs.py
- 15:16, 30 March 2017 (diff | hist) . . (+21) . . CallSNPs.py
- 15:12, 30 March 2017 (diff | hist) . . (+156) . . CallSNPs.py
- 15:10, 30 March 2017 (diff | hist) . . (+26) . . CallSNPs.py
- 15:07, 30 March 2017 (diff | hist) . . (+27) . . CallSNPs.py
- 15:05, 30 March 2017 (diff | hist) . . (+92) . . CallSNPs.py
- 15:02, 30 March 2017 (diff | hist) . . (+7) . . CallSNPs.py
- 13:52, 30 March 2017 (diff | hist) . . (+66) . . CallSNPs.py
- 13:50, 30 March 2017 (diff | hist) . . (0) . . CallSNPs.py
- 13:49, 30 March 2017 (diff | hist) . . (+110) . . CallSNPs.py
- 13:42, 30 March 2017 (diff | hist) . . (+106) . . CallSNPs.py
- 13:36, 30 March 2017 (diff | hist) . . (0) . . CallSNPs.py
- 13:35, 30 March 2017 (diff | hist) . . (+1) . . CallSNPs.py
- 13:35, 30 March 2017 (diff | hist) . . (+68) . . CallSNPs.py
- 13:23, 30 March 2017 (diff | hist) . . (-4) . . CallSNPs.py
- 13:20, 30 March 2017 (diff | hist) . . (+23) . . CallSNPs.py
- 10:16, 30 March 2017 (diff | hist) . . (+94) . . One-liners
- 10:15, 30 March 2017 (diff | hist) . . (+78) . . One-liners
- 09:58, 30 March 2017 (diff | hist) . . (+379) . . One-liners
- 09:53, 30 March 2017 (diff | hist) . . (+847) . . One-liners
- 09:40, 30 March 2017 (diff | hist) . . (-16) . . Main Page
- 09:39, 30 March 2017 (diff | hist) . . (0) . . m One-liners (Rf moved page Awk one-liners and scripts to One-liners)
- 09:39, 30 March 2017 (diff | hist) . . (+24) . . N Awk one-liners and scripts (Rf moved page Awk one-liners and scripts to One-liners) (current)
- 18:53, 29 March 2017 (diff | hist) . . (+348) . . Sra-tools (current)
- 18:31, 29 March 2017 (diff | hist) . . (+50) . . CallSNPs.py
- 17:30, 29 March 2017 (diff | hist) . . (0) . . CallSNPs.py
- 17:29, 29 March 2017 (diff | hist) . . (-9) . . CallSNPs.py
- 17:28, 29 March 2017 (diff | hist) . . (+24) . . CallSNPs.py
- 17:27, 29 March 2017 (diff | hist) . . (+104) . . CallSNPs.py
- 17:01, 29 March 2017 (diff | hist) . . (+17) . . CallSNPs.py
- 17:00, 29 March 2017 (diff | hist) . . (+192) . . CallSNPs.py
- 16:52, 29 March 2017 (diff | hist) . . (+24) . . CallSNPs.py
- 18:16, 28 March 2017 (diff | hist) . . (+633) . . N MinION Coverage sensitivity analysis (Created page with " = Subtract Operations = In the spirit of discovering new sequences, this ivolves subtract what is currently annotated from our alignment dataset. This is a highly untarget...")
- 18:08, 28 March 2017 (diff | hist) . . (+43) . . Main Page
- 13:44, 27 March 2017 (diff | hist) . . (+2) . . Ariba (current)
- 13:43, 27 March 2017 (diff | hist) . . (+350) . . Ariba
- 13:41, 27 March 2017 (diff | hist) . . (+30) . . N Ariba (Created page with "= Introduction = = Links =")
- 13:22, 27 March 2017 (diff | hist) . . (+13) . . Main Page
- 00:10, 24 March 2017 (diff | hist) . . (+218) . . Poretools (current)
- 14:04, 23 March 2017 (diff | hist) . . (+246) . . Canu
- 13:26, 23 March 2017 (diff | hist) . . (+118) . . Canu
- 13:14, 23 March 2017 (diff | hist) . . (-1) . . Theoretical background (current)
- 12:48, 23 March 2017 (diff | hist) . . (-1) . . Theoretical background
- 12:35, 23 March 2017 (diff | hist) . . (+231) . . Theoretical background
- 12:30, 23 March 2017 (diff | hist) . . (-2) . . Theoretical background
- 12:30, 23 March 2017 (diff | hist) . . (+96) . . Theoretical background
- 12:26, 23 March 2017 (diff | hist) . . (+343) . . N Theoretical background (Created page with "= Introduction = == Why does Differential Gene Expression lead to such insightful analysis?== * Of course, all somatics cells have at least one copy of the genome * But just...")
- 12:20, 23 March 2017 (diff | hist) . . (+48) . . Main Page
- 18:46, 21 March 2017 (diff | hist) . . (-6) . . Main Page
- 18:44, 21 March 2017 (diff | hist) . . (-9) . . Main Page
- 18:42, 21 March 2017 (diff | hist) . . (+17) . . Main Page
- 18:38, 21 March 2017 (diff | hist) . . (+114) . . Main Page
- 19:05, 20 March 2017 (diff | hist) . . (+1,677) . . N Node9 network failure incident 16-20.03.2017 (Created page with "= Introduction = Node9 usually a perfectly behaving machine suddenly loses network connections. = Troubleshooting = Going through all the procedures to see which component...") (current)
- 18:59, 20 March 2017 (diff | hist) . . (+51) . . Main Page
- 12:44, 16 March 2017 (diff | hist) . . (0) . . Emailing
- 10:47, 16 March 2017 (diff | hist) . . (+6) . . Emailing
- 10:46, 16 March 2017 (diff | hist) . . (+1,606) . . N Emailing (Created page with "= Introduction = This is mainly about emailing users when their jobs are finished. Only an easy workable solution is presented and it relies on gmail servers and having a sp...")
- 10:30, 16 March 2017 (diff | hist) . . (+15) . . Main Page
- 19:13, 15 March 2017 (diff | hist) . . (+1,326) . . Canu
- 19:11, 15 March 2017 (diff | hist) . . (+291) . . Canu
- 18:17, 15 March 2017 (diff | hist) . . (+89) . . Canu
- 15:58, 15 March 2017 (diff | hist) . . (+191) . . CallSNPs.py
- 15:40, 15 March 2017 (diff | hist) . . (+409) . . CallSNPs.py
- 15:00, 15 March 2017 (diff | hist) . . (+105) . . GenomeTools
- 19:19, 14 March 2017 (diff | hist) . . (+379) . . CallSNPs.py
- 19:09, 14 March 2017 (diff | hist) . . (+278) . . CallSNPs.py
- 19:05, 14 March 2017 (diff | hist) . . (+71) . . CallSNPs.py
- 19:04, 14 March 2017 (diff | hist) . . (+138) . . CallSNPs.py
- 18:57, 14 March 2017 (diff | hist) . . (+300) . . CallSNPs.py
- 17:07, 14 March 2017 (diff | hist) . . (-107) . . Bottlenose dolphin population genomic analysis (current)
- 13:15, 14 March 2017 (diff | hist) . . (+24) . . MinKNOW folders and log files (current)
- 13:15, 14 March 2017 (diff | hist) . . (+168) . . MinKNOW folders and log files
- 13:05, 14 March 2017 (diff | hist) . . (+192) . . MinKNOW folders and log files
- 12:42, 14 March 2017 (diff | hist) . . (+86) . . MinKNOW folders and log files
- 12:41, 14 March 2017 (diff | hist) . . (+551) . . N MinKNOW folders and log files (Created page with "= Introduction = The way The MinKNOW program organises folder, and the makeup of its various log files is complicated. This page is an attempt to keep track of them = Folde...")
- 12:25, 14 March 2017 (diff | hist) . . (+36) . . Main Page
- 19:00, 13 March 2017 (diff | hist) . . (+267) . . One-liners
- 18:50, 13 March 2017 (diff | hist) . . (+350) . . N One-liners (Created page with " You have a genome coverage file in bedgraph format (final, fourth column is the coverage for a particular section) amd would like to find the max value: awk '{if($4>mxc) m...")
- 18:29, 13 March 2017 (diff | hist) . . (+34) . . Main Page
- 18:05, 13 March 2017 (diff | hist) . . (+132) . . Bedtools (current)
- 17:51, 13 March 2017 (diff | hist) . . (+60) . . Samtools
- 16:07, 13 March 2017 (diff | hist) . . (+45) . . Samtools
- 16:00, 13 March 2017 (diff | hist) . . (+549) . . Mash (current)
- 15:04, 13 March 2017 (diff | hist) . . (+899) . . Satsuma (current)
- 14:52, 13 March 2017 (diff | hist) . . (+1) . . Mash
- 14:39, 13 March 2017 (diff | hist) . . (+190) . . Bwa
- 14:23, 13 March 2017 (diff | hist) . . (+390) . . Bwa
- 14:17, 13 March 2017 (diff | hist) . . (+202) . . Bwa
- 13:59, 13 March 2017 (diff | hist) . . (+152) . . N GenomeTools (Created page with "= Introduction = Typically use in conjunction with bedtools and bedops. Includes AnnotationSketch, which is able to render a PNG image from a gff file")
- 13:57, 13 March 2017 (diff | hist) . . (+18) . . Main Page
- 12:14, 13 March 2017 (diff | hist) . . (+118) . . NanoSim (current)
- 12:01, 13 March 2017 (diff | hist) . . (+290) . . Last (current)
- 11:44, 13 March 2017 (diff | hist) . . (+132) . . N NanoSim (Created page with "= Introduction = One of the few, may be even the only, Nanopore read simulator = Requirements = Needs the LAST program and numpy.")
- 11:43, 13 March 2017 (diff | hist) . . (+14) . . Main Page
- 00:48, 13 March 2017 (diff | hist) . . (+69) . . Canu
- 00:44, 13 March 2017 (diff | hist) . . (+11,080) . . Canu
- 23:59, 12 March 2017 (diff | hist) . . (+1) . . Canu
- 15:37, 11 March 2017 (diff | hist) . . (+74) . . Canu
- 18:24, 10 March 2017 (diff | hist) . . (+505) . . Lastz (current)
- 16:21, 10 March 2017 (diff | hist) . . (+71) . . N Lastz (Created page with "= Introduction = An aligner that can map entire genomes to each other.")
- 16:20, 10 March 2017 (diff | hist) . . (+200) . . N Last (Created page with "= Introduction = An aligner that is insensitive to repeat regions. This makes it suitable for mapping sequences against entire genomes. Its chief usage idea is that of not...")
- 16:17, 10 March 2017 (diff | hist) . . (+12) . . Main Page
- 15:11, 10 March 2017 (diff | hist) . . (+4) . . Satsuma
- 15:10, 10 March 2017 (diff | hist) . . (+1,016) . . N Satsuma (Created page with "= Introduction = Synteny-focused aligner = Usage = To load the module: module load satsuma The main executable is Satsuma = Help file output = Satsuma: Wrapper around...")
- 15:08, 10 March 2017 (diff | hist) . . (+14) . . Main Page
- 18:38, 9 March 2017 (diff | hist) . . (+1,529) . . Canu
- 18:25, 9 March 2017 (diff | hist) . . (+98) . . Canu
- 18:17, 9 March 2017 (diff | hist) . . (+346) . . Canu
- 17:34, 9 March 2017 (diff | hist) . . (-51) . . Repeatmasker
- 15:51, 9 March 2017 (diff | hist) . . (+111) . . Picard-tools (current)
- 15:49, 9 March 2017 (diff | hist) . . (+25) . . Picard-tools
- 15:47, 9 March 2017 (diff | hist) . . (+1,934) . . Picard-tools
- 15:37, 9 March 2017 (diff | hist) . . (+35) . . Picard-tools
- 15:33, 9 March 2017 (diff | hist) . . (+219) . . N Canu (Created page with "= Introduction = This is the de-novo genome assembler for long read technologies: mainly PacBio and Oxford Nanopore (MinION). It comes from the Maryland Bioinformatics Labor...")
- 15:30, 9 March 2017 (diff | hist) . . (+11) . . Main Page
- 14:59, 8 March 2017 (diff | hist) . . (+2) . . Mash
- 13:18, 8 March 2017 (diff | hist) . . (+163) . . RAxML (current)
- 13:01, 8 March 2017 (diff | hist) . . (+158) . . Mash
- 12:59, 8 March 2017 (diff | hist) . . (+463) . . Mash
- 12:55, 8 March 2017 (diff | hist) . . (-3) . . Mash
- 12:54, 8 March 2017 (diff | hist) . . (-12) . . Mash
- 12:53, 8 March 2017 (diff | hist) . . (+3,937) . . Mash
- 12:44, 8 March 2017 (diff | hist) . . (+591) . . Mash
- 12:42, 8 March 2017 (diff | hist) . . (+173) . . Mash
- 12:40, 8 March 2017 (diff | hist) . . (-1) . . Mash
- 12:39, 8 March 2017 (diff | hist) . . (+1,670) . . Mash
- 12:33, 8 March 2017 (diff | hist) . . (-10) . . Mash
- 12:32, 8 March 2017 (diff | hist) . . (+1,253) . . Mash
- 12:26, 8 March 2017 (diff | hist) . . (+995) . . Mash
- 12:04, 8 March 2017 (diff | hist) . . (+511) . . Mash
- 12:00, 8 March 2017 (diff | hist) . . (+156) . . Mash
- 11:38, 8 March 2017 (diff | hist) . . (+1) . . Mash
- 11:37, 8 March 2017 (diff | hist) . . (-196) . . Mash
- 11:36, 8 March 2017 (diff | hist) . . (+1,065) . . Mash
- 11:33, 8 March 2017 (diff | hist) . . (+535) . . Mash
- 11:24, 8 March 2017 (diff | hist) . . (+1,342) . . Mash
- 11:21, 8 March 2017 (diff | hist) . . (+640) . . Mash
- 17:13, 5 March 2017 (diff | hist) . . (+244) . . Bedtools
- 17:05, 5 March 2017 (diff | hist) . . (+408) . . Bedtools
- 16:50, 5 March 2017 (diff | hist) . . (+562) . . Bedtools
- 16:29, 5 March 2017 (diff | hist) . . (+2) . . Bedtools
- 16:07, 5 March 2017 (diff | hist) . . (+130) . . Bedtools
- 16:06, 5 March 2017 (diff | hist) . . (+804) . . Bedtools
- 23:42, 4 March 2017 (diff | hist) . . (+495) . . Calculating coverage (current)
- 12:48, 3 March 2017 (diff | hist) . . (+226) . . N Albacore (Created page with "= Introduction = Basecalling software from Oxford Nanopore. Does not work on Windows. Only Mac OS X, Ubuntu Trusty and Ubuntu Xenial. = Usage = read_fast5_basecaller.py -...")
- 12:46, 3 March 2017 (diff | hist) . . (+15) . . Main Page
- 15:09, 2 March 2017 (diff | hist) . . (-56) . . Samtools
- 15:06, 2 March 2017 (diff | hist) . . (+85) . . Samtools
- 12:38, 28 February 2017 (diff | hist) . . (+97) . . N Links (Created page with " = Command line tips = * [https://zellwk.com/blog/fear-of-command-line fear of the command line]") (current)
- 12:37, 28 February 2017 (diff | hist) . . (+12) . . Main Page
- 23:48, 27 February 2017 (diff | hist) . . (+11) . . Main Page
- 18:31, 25 February 2017 (diff | hist) . . (+86) . . Bcftools (current)
- 18:06, 25 February 2017 (diff | hist) . . (+142) . . Bcftools
- 17:55, 25 February 2017 (diff | hist) . . (+87) . . Bcftools
- 17:27, 25 February 2017 (diff | hist) . . (+556) . . N Bcftools (Created page with "= Introduction = This is a VCF manipulation suite from Heng Li, author of samtools. It is included in the samtools package, but is not a series of subcommands under samtools,...")
- 17:19, 25 February 2017 (diff | hist) . . (-3) . . Main Page
- 17:19, 25 February 2017 (diff | hist) . . (+18) . . Main Page
- 15:39, 23 February 2017 (diff | hist) . . (-996) . . Trinity Protocol
- 15:18, 23 February 2017 (diff | hist) . . (+102) . . RSeQC (current)
- 14:37, 23 February 2017 (diff | hist) . . (+269) . . RSeQC
- 14:35, 23 February 2017 (diff | hist) . . (+255) . . N RSeQC (Created page with "= Introduction = This is a python package (so no special module loading is required) and is especially used for its '''inner_distance.py''' script. = Usage = inner_distanc...")
- 14:30, 23 February 2017 (diff | hist) . . (+12) . . Main Page
- 14:15, 23 February 2017 (diff | hist) . . (-312) . . Trinity Protocol
- 12:48, 23 February 2017 (diff | hist) . . (+83) . . Mapping.py (current)
- 12:46, 23 February 2017 (diff | hist) . . (+1,641) . . N Mapping.py (Created page with "= Introduction = Another part of Miguel Pnheiros script_tools suite. = Outline = Each pair of FASTQ files are mapped to the reference. Bowtie, bwa or smalt are available....")
- 12:39, 23 February 2017 (diff | hist) . . (+17) . . Main Page
- 00:26, 21 February 2017 (diff | hist) . . (+373) . . Bwa
- 19:08, 17 February 2017 (diff | hist) . . (+1,913) . . N Memory repair glitch 16.02.2017 (Created page with "= Introduction = As detailed in the hardware section, there has been ongoing memory correction warnings for something like an entire year now. In December, I had finally got...") (current)
- 15:50, 17 February 2017 (diff | hist) . . (+38) . . Main Page
- 19:40, 15 February 2017 (diff | hist) . . (0) . . Picard-tools
- 19:39, 15 February 2017 (diff | hist) . . (+312) . . Picard-tools
- 19:22, 15 February 2017 (diff | hist) . . (+838) . . N Picard-tools (Created page with "= Introduction = Started as a companion package to GATK, so that GATK could concentrate on its core functions, but has blossomed beyond that to be quite substnatial in its ow...")
- 19:03, 15 February 2017 (diff | hist) . . (+19) . . Main Page
- 16:44, 15 February 2017 (diff | hist) . . (+33) . . Hardware Issues
- 16:40, 15 February 2017 (diff | hist) . . (+283) . . Hardware Issues
- 15:14, 15 February 2017 (diff | hist) . . (+227) . . Samtools
- 14:45, 15 February 2017 (diff | hist) . . (+63) . . Samtools
- 14:43, 15 February 2017 (diff | hist) . . (+155) . . Samtools
- 12:18, 15 February 2017 (diff | hist) . . (+439) . . Bwa
- 18:30, 14 February 2017 (diff | hist) . . (+39) . . Quast (current)
- 18:29, 14 February 2017 (diff | hist) . . (+461) . . Quast
- 12:15, 14 February 2017 (diff | hist) . . (+667) . . Sickle (current)
- 12:07, 14 February 2017 (diff | hist) . . (+180) . . N Sickle (Created page with "= Introduction = Used for trimming FASTQ files based on quality. This is not a complicated program. built in C and using Heng Li's '''kseq.h''' convenient macros file. = Us...")
- 12:06, 14 February 2017 (diff | hist) . . (+13) . . Main Page
- 12:54, 13 February 2017 (diff | hist) . . (+148) . . Poretools
- 17:49, 10 February 2017 (diff | hist) . . (+340) . . Assembly-stats (current)
- 17:25, 10 February 2017 (diff | hist) . . (+464) . . N Assembly-stats (Created page with "= Introductions = Some assembly programs do not output any summary details regarding the assembly they produce. This program is useful in listing out various ket quality (or...")
- 16:48, 10 February 2017 (diff | hist) . . (+245) . . Main Page
- 16:42, 10 February 2017 (diff | hist) . . (+21) . . Main Page
- 16:28, 10 February 2017 (diff | hist) . . (+83) . . SPAdes (current)
- 16:27, 10 February 2017 (diff | hist) . . (+96) . . SPAdes
- 16:16, 10 February 2017 (diff | hist) . . (+204) . . SPAdes
- 16:13, 10 February 2017 (diff | hist) . . (+176) . . SPAdes
- 16:04, 10 February 2017 (diff | hist) . . (+150) . . SPAdes
- 15:53, 10 February 2017 (diff | hist) . . (+443) . . SPAdes
- 15:38, 10 February 2017 (diff | hist) . . (+5) . . SPAdes
- 15:24, 10 February 2017 (diff | hist) . . (+5) . . SPAdes
- 15:21, 10 February 2017 (diff | hist) . . (-19) . . SPAdes
- 15:18, 10 February 2017 (diff | hist) . . (+6) . . SPAdes
- 15:15, 10 February 2017 (diff | hist) . . (+148) . . SPAdes
- 13:27, 10 February 2017 (diff | hist) . . (+61) . . Quast
- 17:43, 9 February 2017 (diff | hist) . . (+27) . . Quast
- 17:35, 9 February 2017 (diff | hist) . . (-2,127) . . MinION (Oxford Nanopore)
- 17:34, 9 February 2017 (diff | hist) . . (+2,195) . . N Poretools (Created page with "= Introduction Python tools for analysing fast5 files, which are output by the MinION sequencing system. = Usage = == Example == poretools fastq 5CG6210Y8Z_20160816_FNFA...")
- 17:54, 8 February 2017 (diff | hist) . . (+89) . . MinION (Oxford Nanopore)
- 14:35, 8 February 2017 (diff | hist) . . (+579) . . MinION (Oxford Nanopore)
- 13:03, 8 February 2017 (diff | hist) . . (+208) . . MinION (Oxford Nanopore)
- 16:18, 7 February 2017 (diff | hist) . . (+11) . . R (up) (current)
- 15:44, 7 February 2017 (diff | hist) . . (+132) . . R (up)
- 15:28, 7 February 2017 (diff | hist) . . (+26) . . R
- 15:19, 7 February 2017 (diff | hist) . . (+543) . . R
- 13:30, 7 February 2017 (diff | hist) . . (+63) . . R
- 13:24, 7 February 2017 (diff | hist) . . (+832) . . R
- 12:50, 7 February 2017 (diff | hist) . . (+80) . . R
- 12:43, 7 February 2017 (diff | hist) . . (+146) . . R
- 12:14, 7 February 2017 (diff | hist) . . (+513) . . N R (Created page with "= Introduction = This is a well known open source statistics packages and there is abundant information on the internet about using it. Marvin's R version is 3.2.1 which dat...")
- 11:59, 7 February 2017 (diff | hist) . . (+8) . . Main Page
- 18:49, 6 February 2017 (diff | hist) . . (0) . . Quast
- 16:34, 6 February 2017 (diff | hist) . . (+132) . . N PoRe (Created page with "= Introduction = R package for handling fast5 and MinION runs = Links = [https://github.com/mw55309/poRe_docs main documentation]") (current)
- 16:32, 6 February 2017 (diff | hist) . . (+27) . . Main Page
- 15:45, 6 February 2017 (diff | hist) . . (+618) . . Quast
- 14:40, 6 February 2017 (diff | hist) . . (+305) . . N Quast (Created page with "= Introduction = Quast is a software package that assesses genome assemblies. It is developed by the group that develops SPAdes. = Usage = To load: module load quast An...")
- 14:32, 6 February 2017 (diff | hist) . . (+12) . . Main Page
- 17:49, 3 February 2017 (diff | hist) . . (+229) . . MinION (Oxford Nanopore)
- 16:48, 3 February 2017 (diff | hist) . . (+262) . . MinION (Oxford Nanopore)
- 16:43, 3 February 2017 (diff | hist) . . (+160) . . MinION (Oxford Nanopore)
- 19:21, 2 February 2017 (diff | hist) . . (+63) . . MinION (Oxford Nanopore)
- 19:17, 2 February 2017 (diff | hist) . . (-1) . . MinION (Oxford Nanopore)
- 17:31, 2 February 2017 (diff | hist) . . (+33) . . MinION (Oxford Nanopore)
- 17:30, 2 February 2017 (diff | hist) . . (+88) . . MinION (Oxford Nanopore)
- 17:29, 2 February 2017 (diff | hist) . . (+71) . . MinION (Oxford Nanopore)
- 17:27, 2 February 2017 (diff | hist) . . (-108) . . MinION (Oxford Nanopore)
- 17:24, 2 February 2017 (diff | hist) . . (+77) . . MinION (Oxford Nanopore)
- 17:24, 2 February 2017 (diff | hist) . . (+215) . . MinION (Oxford Nanopore)
- 17:19, 2 February 2017 (diff | hist) . . (+603) . . MinION (Oxford Nanopore)
- 17:14, 2 February 2017 (diff | hist) . . (+139) . . MinION (Oxford Nanopore)
- 17:12, 2 February 2017 (diff | hist) . . (+157) . . MinION (Oxford Nanopore)
- 17:01, 2 February 2017 (diff | hist) . . (+199) . . MinION (Oxford Nanopore)
- 16:50, 2 February 2017 (diff | hist) . . (+116) . . MinION (Oxford Nanopore)
- 16:48, 2 February 2017 (diff | hist) . . (+112) . . MinION (Oxford Nanopore)
- 16:45, 2 February 2017 (diff | hist) . . (+27) . . MinION (Oxford Nanopore)
- 16:44, 2 February 2017 (diff | hist) . . (+428) . . MinION (Oxford Nanopore)
- 16:41, 2 February 2017 (diff | hist) . . (-2) . . MinION (Oxford Nanopore)
- 16:40, 2 February 2017 (diff | hist) . . (+95) . . MinION (Oxford Nanopore)
- 16:35, 2 February 2017 (diff | hist) . . (+111) . . MinION (Oxford Nanopore)
- 16:33, 2 February 2017 (diff | hist) . . (+226) . . MinION (Oxford Nanopore)
- 16:29, 2 February 2017 (diff | hist) . . (+2) . . MinION (Oxford Nanopore)
- 16:28, 2 February 2017 (diff | hist) . . (+91) . . MinION (Oxford Nanopore)
- 16:27, 2 February 2017 (diff | hist) . . (0) . . N File:Joshquick f1000.pdf (current)
- 16:27, 2 February 2017 (diff | hist) . . (-5) . . MinION (Oxford Nanopore)
- 16:17, 2 February 2017 (diff | hist) . . (+43) . . MinION (Oxford Nanopore)
- 16:13, 2 February 2017 (diff | hist) . . (+1) . . MinION (Oxford Nanopore)
- 16:12, 2 February 2017 (diff | hist) . . (-5) . . MinION (Oxford Nanopore)
- 16:10, 2 February 2017 (diff | hist) . . (+5) . . MinION (Oxford Nanopore)
- 16:10, 2 February 2017 (diff | hist) . . (+1) . . MinION (Oxford Nanopore)
- 16:08, 2 February 2017 (diff | hist) . . (+1) . . MinION (Oxford Nanopore)
- 16:08, 2 February 2017 (diff | hist) . . (+40) . . MinION (Oxford Nanopore)
- 16:06, 2 February 2017 (diff | hist) . . (0) . . N File:PoreCamp2016 Running MinION.pdf (current)
- 16:01, 2 February 2017 (diff | hist) . . (+46) . . MinION (Oxford Nanopore)
- 15:56, 2 February 2017 (diff | hist) . . (+218) . . MinION (Oxford Nanopore)
- 15:43, 2 February 2017 (diff | hist) . . (+1) . . MinION (Oxford Nanopore)
- 15:39, 2 February 2017 (diff | hist) . . (+151) . . MinION (Oxford Nanopore)
- 15:35, 2 February 2017 (diff | hist) . . (+226) . . MinION (Oxford Nanopore)
- 15:31, 2 February 2017 (diff | hist) . . (+47) . . SPAdes
- 15:18, 2 February 2017 (diff | hist) . . (+441) . . MinION (Oxford Nanopore)
- 15:10, 2 February 2017 (diff | hist) . . (+259) . . MinION (Oxford Nanopore)
- 14:59, 2 February 2017 (diff | hist) . . (+82) . . MinION (Oxford Nanopore)
- 14:47, 2 February 2017 (diff | hist) . . (+10) . . MinION (Oxford Nanopore)
- 14:45, 2 February 2017 (diff | hist) . . (+30) . . MinION (Oxford Nanopore)
- 14:44, 2 February 2017 (diff | hist) . . (0) . . N File:Prep0.png (current)
- 14:43, 2 February 2017 (diff | hist) . . (0) . . N File:Pore0.png (current)
- 14:42, 2 February 2017 (diff | hist) . . (+308) . . MinION (Oxford Nanopore)
- 14:24, 2 February 2017 (diff | hist) . . (+830) . . MinION (Oxford Nanopore)
- 12:35, 2 February 2017 (diff | hist) . . (+84) . . MinION (Oxford Nanopore)
- 12:28, 2 February 2017 (diff | hist) . . (-2) . . MinION (Oxford Nanopore)
- 12:28, 2 February 2017 (diff | hist) . . (+35) . . MinION (Oxford Nanopore)
- 12:26, 2 February 2017 (diff | hist) . . (+309) . . MinION (Oxford Nanopore)
- 12:17, 2 February 2017 (diff | hist) . . (+388) . . MinION (Oxford Nanopore)
- 11:59, 2 February 2017 (diff | hist) . . (+208) . . MinION (Oxford Nanopore)
- 11:55, 2 February 2017 (diff | hist) . . (+150) . . MinION (Oxford Nanopore)
- 11:47, 2 February 2017 (diff | hist) . . (+296) . . MinION (Oxford Nanopore)
- 11:39, 2 February 2017 (diff | hist) . . (+20) . . MinION (Oxford Nanopore)
- 11:38, 2 February 2017 (diff | hist) . . (0) . . N File:Ana0.png (current)
- 11:35, 2 February 2017 (diff | hist) . . (+131) . . MinION (Oxford Nanopore)
- 11:32, 2 February 2017 (diff | hist) . . (+149) . . MinION (Oxford Nanopore)
- 16:29, 1 February 2017 (diff | hist) . . (+122) . . MinION (Oxford Nanopore)
- 15:56, 1 February 2017 (diff | hist) . . (+485) . . MinION (Oxford Nanopore)
- 15:42, 1 February 2017 (diff | hist) . . (+290) . . N MinION (Oxford Nanopore) (Created page with "= Introduction = Entirely unique sequencing method, where the flowcell is inserted into a USB container, and from there plugged into a computer. Due to its small size in com...")
- 15:40, 1 February 2017 (diff | hist) . . (+31) . . Main Page
- 13:05, 1 February 2017 (diff | hist) . . (+1) . . Roary
- 13:05, 1 February 2017 (diff | hist) . . (+57) . . Roary
- 13:04, 1 February 2017 (diff | hist) . . (+203) . . N Roary (Created page with "= Introductio= = Usage tutorial = The tutorial located [https://github.com/microgenomics/tutorials/blob/master/pangenome.md here] is a good way to both test and get aquainte...")
- 13:02, 1 February 2017 (diff | hist) . . (+12) . . Main Page
- 16:25, 31 January 2017 (diff | hist) . . (+9) . . BUSCO (current)
- 16:24, 31 January 2017 (diff | hist) . . (-4) . . BUSCO
- 15:29, 31 January 2017 (diff | hist) . . (+39) . . BUSCO
- 15:28, 31 January 2017 (diff | hist) . . (0) . . BUSCO
- 15:19, 31 January 2017 (diff | hist) . . (+17) . . BUSCO
- 15:57, 30 January 2017 (diff | hist) . . (-2) . . Detonate (current)
- 15:57, 30 January 2017 (diff | hist) . . (+93) . . Detonate
- 15:48, 30 January 2017 (diff | hist) . . (+6) . . Detonate
- 15:47, 30 January 2017 (diff | hist) . . (+1) . . Detonate
- 15:46, 30 January 2017 (diff | hist) . . (+2) . . Detonate
- 15:45, 30 January 2017 (diff | hist) . . (+420) . . Detonate
- 15:35, 30 January 2017 (diff | hist) . . (+8) . . Detonate
- 15:35, 30 January 2017 (diff | hist) . . (+1) . . Detonate
- 15:34, 30 January 2017 (diff | hist) . . (+457) . . Detonate
- 15:14, 30 January 2017 (diff | hist) . . (+382) . . Detonate
- 15:01, 30 January 2017 (diff | hist) . . (+157) . . Detonate
- 14:42, 30 January 2017 (diff | hist) . . (+252) . . Detonate
- 14:35, 30 January 2017 (diff | hist) . . (+125) . . Detonate
- 14:31, 30 January 2017 (diff | hist) . . (+179) . . Detonate
- 14:27, 30 January 2017 (diff | hist) . . (+49) . . Detonate
- 14:05, 30 January 2017 (diff | hist) . . (+444) . . Detonate
- 13:24, 30 January 2017 (diff | hist) . . (+47) . . Detonate
- 13:23, 30 January 2017 (diff | hist) . . (+40) . . Detonate
- 13:23, 30 January 2017 (diff | hist) . . (0) . . Detonate
- 13:22, 30 January 2017 (diff | hist) . . (0) . . Detonate
- 13:22, 30 January 2017 (diff | hist) . . (0) . . Detonate
- 13:22, 30 January 2017 (diff | hist) . . (0) . . Detonate
- 13:22, 30 January 2017 (diff | hist) . . (+534) . . N Detonate (Created page with "= Introduction = Quality evaulation of a de-novo transcriptome assembly from the creators of RSEM (Deweylab). = Layout = Two main aspects to this program. Also included her...")
- 13:13, 30 January 2017 (diff | hist) . . (+15) . . Main Page
- 17:49, 27 January 2017 (diff | hist) . . (+24) . . Trinity (current)
- 17:40, 27 January 2017 (diff | hist) . . (+230) . . Trinity
- 17:25, 27 January 2017 (diff | hist) . . (+1) . . Trinity
- 17:24, 27 January 2017 (diff | hist) . . (+205) . . Trinity
- 17:05, 27 January 2017 (diff | hist) . . (-128) . . Trinity
- 17:04, 27 January 2017 (diff | hist) . . (-342) . . Trinity
- 16:47, 27 January 2017 (diff | hist) . . (-219) . . Trinity
- 16:43, 27 January 2017 (diff | hist) . . (-1,561) . . Trinity
- 16:19, 27 January 2017 (diff | hist) . . (+299) . . Trinity
- 16:16, 27 January 2017 (diff | hist) . . (-1,261) . . Trinity
- 15:59, 27 January 2017 (diff | hist) . . (-362) . . Trinity
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