User contributions
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- 15:42, 6 July 2016 (diff | hist) . . (+13) . . Main Page
- 18:17, 5 July 2016 (diff | hist) . . (+317) . . Trimmomatic (current)
- 18:06, 5 July 2016 (diff | hist) . . (+53) . . Trimmomatic
- 18:05, 5 July 2016 (diff | hist) . . (+171) . . Trimmomatic
- 15:54, 5 July 2016 (diff | hist) . . (+550) . . Trimmomatic
- 18:01, 2 July 2016 (diff | hist) . . (-3) . . SPAdes
- 18:01, 2 July 2016 (diff | hist) . . (+126) . . SPAdes
- 16:36, 2 July 2016 (diff | hist) . . (+149) . . SPAdes
- 17:47, 1 July 2016 (diff | hist) . . (+735) . . SPAdes
- 17:16, 1 July 2016 (diff | hist) . . (+613) . . SPAdes
- 14:57, 30 June 2016 (diff | hist) . . (-2) . . Calculating coverage
- 14:53, 30 June 2016 (diff | hist) . . (+40) . . Calculating coverage
- 14:03, 30 June 2016 (diff | hist) . . (+663) . . Calculating coverage
- 17:12, 29 June 2016 (diff | hist) . . (+324) . . N Trimmomatic (Created page with "=Introduction= = Example use-cases= java -jar $PATHTRIMMOJAR/trimmomatic-0.32.jar PE -threads 6 -phred33 $DATASETPATH/Pair1.fastq.gz $DATASETPATH/Pair1.fastq.gz forward_pai...")
- 17:03, 29 June 2016 (diff | hist) . . (+18) . . Main Page
- 16:19, 29 June 2016 (diff | hist) . . (+164) . . 6TB storage expansion
- 16:05, 29 June 2016 (diff | hist) . . (+1,183) . . 6TB storage expansion
- 15:37, 29 June 2016 (diff | hist) . . (+754) . . 6TB storage expansion
- 15:28, 29 June 2016 (diff | hist) . . (+571) . . 6TB storage expansion
- 14:54, 29 June 2016 (diff | hist) . . (+90) . . 6TB storage expansion
- 14:50, 29 June 2016 (diff | hist) . . (+2) . . 6TB storage expansion
- 14:48, 29 June 2016 (diff | hist) . . (+3,259) . . 6TB storage expansion
- 14:42, 29 June 2016 (diff | hist) . . (+87) . . 6TB storage expansion
- 14:38, 29 June 2016 (diff | hist) . . (+7) . . 6TB storage expansion
- 14:38, 29 June 2016 (diff | hist) . . (+1,892) . . 6TB storage expansion
- 12:24, 29 June 2016 (diff | hist) . . (-1) . . 6TB storage expansion
- 12:13, 29 June 2016 (diff | hist) . . (+21) . . Samtools
- 12:06, 29 June 2016 (diff | hist) . . (+84) . . Samtools
- 10:57, 29 June 2016 (diff | hist) . . (+124) . . Samtools
- 10:32, 29 June 2016 (diff | hist) . . (+310) . . Samtools
- 18:31, 28 June 2016 (diff | hist) . . (-4) . . Main Page
- 18:23, 28 June 2016 (diff | hist) . . (-130) . . 6TB storage expansion
- 18:23, 28 June 2016 (diff | hist) . . (+226) . . 6TB storage expansion
- 17:53, 28 June 2016 (diff | hist) . . (+48) . . Calculating coverage
- 17:48, 28 June 2016 (diff | hist) . . (+300) . . N Calculating coverage (Created page with "= Introduction = Coverage can be calculated in several different ways and this pages aims to describe a few of them = Bedtools genomecov = This is one of the most commonly...")
- 17:16, 28 June 2016 (diff | hist) . . (+216) . . Main Page
- 13:42, 28 June 2016 (diff | hist) . . (+18) . . CallSNPs.py
- 14:35, 27 June 2016 (diff | hist) . . (+26) . . Samtools
- 14:18, 27 June 2016 (diff | hist) . . (-359) . . Main Page
- 14:17, 27 June 2016 (diff | hist) . . (+346) . . Main Page
- 16:21, 23 June 2016 (diff | hist) . . (+85) . . 6TB storage expansion
- 16:19, 23 June 2016 (diff | hist) . . (+111) . . 6TB storage expansion
- 16:14, 23 June 2016 (diff | hist) . . (+241) . . 6TB storage expansion
- 16:12, 23 June 2016 (diff | hist) . . (+58) . . 6TB storage expansion
- 16:04, 23 June 2016 (diff | hist) . . (+309) . . 6TB storage expansion (→= interpreter)
- 15:55, 23 June 2016 (diff | hist) . . (+161) . . 6TB storage expansion
- 15:45, 23 June 2016 (diff | hist) . . (+5,102) . . N BamQC (Created page with "= Introduction = From S. Andrews' lab, who also produce FastQC = Helpfile output = BamQC - A high throughput mapped sequence QC analysis tool SYNOPSIS ba...") (current)
- 15:44, 23 June 2016 (diff | hist) . . (+12) . . Main Page
- 15:32, 23 June 2016 (diff | hist) . . (+14) . . Main Page
- 14:48, 23 June 2016 (diff | hist) . . (+45) . . 6TB storage expansion
- 14:00, 23 June 2016 (diff | hist) . . (+24) . . 6TB storage expansion
- 13:58, 23 June 2016 (diff | hist) . . (+285) . . 6TB storage expansion
- 13:44, 23 June 2016 (diff | hist) . . (+99) . . SPAdes
- 13:37, 23 June 2016 (diff | hist) . . (+218) . . 6TB storage expansion (→Tools)
- 13:25, 23 June 2016 (diff | hist) . . (+2) . . 6TB storage expansion
- 13:24, 23 June 2016 (diff | hist) . . (+365) . . 6TB storage expansion
- 13:16, 23 June 2016 (diff | hist) . . (+130) . . 6TB storage expansion (→Links)
- 13:15, 23 June 2016 (diff | hist) . . (+280) . . 6TB storage expansion
- 13:11, 23 June 2016 (diff | hist) . . (+235) . . N Frontend Restart (Created page with "= Introduction = Contains notes on how to restart marvin. = Provisos = Restarting marvin is a major operation, as all running jobs are lost. It is therefore necessary to a...")
- 13:06, 23 June 2016 (diff | hist) . . (+23) . . Main Page
- 12:28, 23 June 2016 (diff | hist) . . (+262) . . N CAFE (Created page with "= Introduction = Matthew Hahn's software for detecting evolution (rise/demise) of gene families. Operationally, it seems somewhat unusual, as it has an interpreter. There a...") (current)
- 12:26, 23 June 2016 (diff | hist) . . (+13) . . Main Page
- 15:01, 22 June 2016 (diff | hist) . . (+19) . . Main Page
- 23:40, 21 June 2016 (diff | hist) . . (+156) . . OrthoFinder (current)
- 23:38, 21 June 2016 (diff | hist) . . (+3,556) . . OrthoFinder
- 22:46, 21 June 2016 (diff | hist) . . (+110) . . OrthoFinder
- 22:06, 21 June 2016 (diff | hist) . . (+19,663) . . OrthoFinder
- 21:41, 21 June 2016 (diff | hist) . . (+99) . . N OrthoFinder (Created page with "= Introduction = An orthology finder seen in some circles as better than the widely used OrthoMCL.")
- 21:39, 21 June 2016 (diff | hist) . . (+1) . . Main Page
- 21:34, 21 June 2016 (diff | hist) . . (+17) . . Main Page
- 13:09, 21 June 2016 (diff | hist) . . (+229) . . N 6TB storage expansion (Created page with "= Introduction = 56 instead of 50TB are now available for the bioinformatics cluster. The tasks required to realize this extra space are: * rescan multipath, details: multipa...")
- 12:26, 21 June 2016 (diff | hist) . . (+28) . . Main Page
- 17:34, 14 June 2016 (diff | hist) . . (+291) . . Node1 issues
- 16:18, 14 June 2016 (diff | hist) . . (+463) . . Node1 issues
- 16:06, 14 June 2016 (diff | hist) . . (+142) . . Node1 issues
- 16:01, 14 June 2016 (diff | hist) . . (+1,445) . . Node1 issues
- 15:58, 14 June 2016 (diff | hist) . . (+84) . . Node1 issues
- 15:50, 14 June 2016 (diff | hist) . . (+51) . . Node1 issues
- 15:45, 14 June 2016 (diff | hist) . . (+2,525) . . Node1 issues
- 15:34, 14 June 2016 (diff | hist) . . (+446) . . Node1 issues
- 15:28, 14 June 2016 (diff | hist) . . (+391) . . N Node1 issues (Created page with "=Red Hat Subscription issues= At some point in March 2016, node1 was not conencting to the repositories properly. the command subscription-manager identity After this, I go...")
- 15:23, 14 June 2016 (diff | hist) . . (+19) . . Main Page
- 16:23, 10 June 2016 (diff | hist) . . (+304) . . N Users and Groups (Created page with "= Introduction= Some, not all, of the tips for setting up users and groups. = * Groups often need to be set up in smbldap, but not always. It's desired because it means al...")
- 16:16, 10 June 2016 (diff | hist) . . (+23) . . Main Page
- 22:08, 9 June 2016 (diff | hist) . . (+307) . . Sra-tools
- 12:55, 9 June 2016 (diff | hist) . . (+64) . . Kallisto (current)
- 12:35, 9 June 2016 (diff | hist) . . (+1) . . CMake (current)
- 12:16, 9 June 2016 (diff | hist) . . (+45) . . CMake
- 12:14, 9 June 2016 (diff | hist) . . (+130) . . CMake
- 12:00, 9 June 2016 (diff | hist) . . (0) . . CMake
- 11:59, 9 June 2016 (diff | hist) . . (+382) . . CMake
- 10:30, 9 June 2016 (diff | hist) . . (+327) . . CMake
- 10:03, 9 June 2016 (diff | hist) . . (+429) . . N CMake (Created page with "= Introduction = Cmake is a compilation configuration platform which promises cross platform portability. I.e. it is apparently able to compile for Linux, MacOSX and Windows....")
- 09:39, 9 June 2016 (diff | hist) . . (+12) . . Main Page
- 22:41, 8 June 2016 (diff | hist) . . (+8) . . Samtools
- 22:13, 8 June 2016 (diff | hist) . . (+178) . . Samtools
- 14:36, 8 June 2016 (diff | hist) . . (-2) . . Samtools
- 13:47, 8 June 2016 (diff | hist) . . (+87) . . Samtools
- 13:28, 8 June 2016 (diff | hist) . . (+187) . . Samtools
- 13:26, 8 June 2016 (diff | hist) . . (+622) . . Samtools
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