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Pan-genome maker from Andrew Page mostly coded in Perl.

Usage tutorial

The tutorial located here is a good way to both test and get aquainted with roary's capabilities.


Roary will now install under cpanm. However it is necessary to have all the dependency modules loaded, and it has quite a number of them:

  • fasttree
  • cd-hit
  • prank-msa
  • mafft
  • mcl
  • bedtools