Difference between revisions of "Repeatmodeler"
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Revision as of 11:56, 20 October 2017
RepeatModeler has a number of dependencies. How these are installed are detailed below:
nseg and nmerge (included in nseg) are quite old programs coded in C by NCBI. These were installed on all machines in /usr/local/bin
The same is done with RECON, which consists of the following executables:
So all these are now available in /usr/local/bin in the nodes as well.
As this also only includes two C-coded executables with quite good names, it is easy enough to install it locally on all the nodes:
and also the following perl scripts (using the unusual *.prl extension) must be also be installed:
This is quite similar to RepeatMasker, although there is an opportunity to manually edit RepModelConfig.pm.tmp which is more accurate and convenient than the automatic configure script. Predictably, it will only be active when the tmp extension is hived off.