Difference between revisions of "Kallisto"

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== Links ==
 
== Links ==
 
* Kallisto's own getting started page at [https://pachterlab.github.io/kallisto/starting.html starting]
 
* Kallisto's own getting started page at [https://pachterlab.github.io/kallisto/starting.html starting]
* [https://benchtobioinformatics.wordpress.com/2015/07/10/using-kallisto-for-gene-expression-analysis-of-published-rnaseq-data benchtobioinformatics/
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* [https://benchtobioinformatics.wordpress.com/2015/07/10/using-kallisto-for-gene-expression-analysis-of-published-rnaseq-data benchtobioinformatics]
 
* [http://andrewtmckenzie.com/2015/05/12/how-to-run-kallisto-on-ncbi-sra-rna-seq-data-for-differential-expression-using-the-mac-terminal Andrew MacKenzie]
 
* [http://andrewtmckenzie.com/2015/05/12/how-to-run-kallisto-on-ncbi-sra-rna-seq-data-for-differential-expression-using-the-mac-terminal Andrew MacKenzie]

Revision as of 18:51, 23 March 2016

It's the new (2015) way of calculating gene expression abundance from NGS short reads

It calimms a large increase in speed by avoiding the normal alignment step

Using

Links