Difference between revisions of "GenomeTools"

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Its commands start with a '''gt''' and then a subcommand, such as '''gff3validator''' or '''sketch'''.
 
Its commands start with a '''gt''' and then a subcommand, such as '''gff3validator''' or '''sketch'''.
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= Tools =
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== Repfind ==
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This is a Stefan Kurtz contribution, and can be found in the code under
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genometools-1.5.9/src/tools/gt_repfind.c

Revision as of 10:05, 9 October 2017

Introduction

Typically use in conjunction with bedtools and bedops.

Includes AnnotationSketch, which is able to render a PNG image from a gff file.

Its commands start with a gt and then a subcommand, such as gff3validator or sketch.


Tools

Repfind

This is a Stefan Kurtz contribution, and can be found in the code under

genometools-1.5.9/src/tools/gt_repfind.c