Difference between revisions of "Detonate"

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*# rsem-scan-for-paired-end-reads
 
*# rsem-scan-for-paired-end-reads
 
*# rsem-simulate-reads
 
*# rsem-simulate-reads
 +
*# rsem-synthesis-reference-transcripts
  
 
* ref-eval
 
* ref-eval

Revision as of 12:23, 30 January 2017

Introduction

Quality evaulation of a de-novo transcriptome assembly from the creators of RSEM (Deweylab).

Layout

Two main aspects to this program. Also included here are the executables associated

  • rsem-eval
    1. rsem-eval-calculate-score
    2. rsem-eval-estimate-transcript-length-distribution
    3. rsem-plot-model
    4. rsem-build-read-index
    5. rsem-eval-run-em
    6. rsem-extract-reference-transcripts
    7. rsem-parse-alignments
    8. rsem-preref
    9. rsem-sam-validator
    10. rsem-scan-for-paired-end-reads
    11. rsem-simulate-reads
    12. rsem-synthesis-reference-transcripts
  • ref-eval