Difference between revisions of "ChIP-Seq Top2 peak-calling"
| Line 45: | Line 45: | ||
Using FASTQC and them MultiQC. | Using FASTQC and them MultiQC. | ||
| − | Results linked | + | Results linked [http://stab.st-andrews.ac.uk/stab/top2/fastqc.html here]. |
= Papers = | = Papers = | ||
Revision as of 14:55, 30 May 2017
Introduction
ChIP-Seq on Mutant vs. Wildtype, two states, 4 sets of of pairs each, for a total of 16 pairs of paired-end datasets.
Raw data description
Mutant:
ULS1INP_S6_L001_R1_001.fastq.gz ULS1INP_S6_L001_R2_001.fastq.gz ULS1INP_S6_L002_R1_001.fastq.gz ULS1INP_S6_L002_R2_001.fastq.gz ULS1INP_S6_L003_R1_001.fastq.gz ULS1INP_S6_L003_R2_001.fastq.gz ULS1INP_S6_L004_R1_001.fastq.gz ULS1INP_S6_L004_R2_001.fastq.gz USL1IP_S7_L001_R1_001.fastq.gz USL1IP_S7_L001_R2_001.fastq.gz USL1IP_S7_L002_R1_001.fastq.gz USL1IP_S7_L002_R2_001.fastq.gz USL1IP_S7_L003_R1_001.fastq.gz USL1IP_S7_L003_R2_001.fastq.gz USL1IP_S7_L004_R1_001.fastq.gz USL1IP_S7_L004_R2_001.fastq.gz
Wildtype:
WTINP_S4_L001_R1_001.fastq.gz WTINP_S4_L001_R2_001.fastq.gz WTINP_S4_L002_R1_001.fastq.gz WTINP_S4_L002_R2_001.fastq.gz WTINP_S4_L003_R1_001.fastq.gz WTINP_S4_L003_R2_001.fastq.gz WTINP_S4_L004_R1_001.fastq.gz WTINP_S4_L004_R2_001.fastq.gz WTIP_S5_L001_R1_001.fastq.gz WTIP_S5_L001_R2_001.fastq.gz WTIP_S5_L002_R1_001.fastq.gz WTIP_S5_L002_R2_001.fastq.gz WTIP_S5_L003_R1_001.fastq.gz WTIP_S5_L003_R2_001.fastq.gz WTIP_S5_L004_R1_001.fastq.gz WTIP_S5_L004_R2_001.fastq.gz
Raw dataset quality analysis
Using FASTQC and them MultiQC.
Results linked here.
