Difference between revisions of "Calculating coverage"
(Created page with "= Introduction = Coverage can be calculated in several different ways and this pages aims to describe a few of them = Bedtools genomecov = This is one of the most commonly...") |
(No difference)
|
Revision as of 17:48, 28 June 2016
Introduction
Coverage can be calculated in several different ways and this pages aims to describe a few of them
Bedtools genomecov
This is one of the most commonly used methods and requires loading of the bedtools module. The base of the command is
bedtools genomecov -bga -ibam <bamfile>
