Difference between revisions of "Blast"

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(Created page with "=Introduction= The workhorse of bioinformatics, some tips on usgae, and (mostly) how to speed it up = Benchmark Exercises = == Transcriptome Panda Blood == * 92600 transcri...")
 
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=Introduction=
 
=Introduction=
The workhorse of bioinformatics, some tips on usgae, and (mostly) how to speed it up
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The workhorse of bioinformatics, some tips on usage, and (mostly) how to speed it up
  
 
= Benchmark Exercises =
 
= Benchmark Exercises =

Revision as of 14:46, 1 February 2016

Introduction

The workhorse of bioinformatics, some tips on usage, and (mostly) how to speed it up

Benchmark Exercises

Transcriptome Panda Blood

  • 92600 transcripts (contigs) in 2.4 million line FASTA file.
  • blastx speed on 62-fragmented nr database: 5% of contigs in 33 hours on blastx