Difference between revisions of "Albacore"
(→Introduction) |
(→Introduction) |
||
| Line 4: | Line 4: | ||
| − | Accessed by loading python/3.4 | + | Accessed by loading python/3.6.4 |
| + | |||
| + | |||
| + | ==Updating== | ||
| + | https://community.nanoporetech.com/protocols/albacore-offline-basecalli/v/abec_2003_v1_revan_29nov2016/run-albacore-on-linux | ||
| + | |||
| + | |||
| + | Get the .whl and run | ||
| + | |||
| + | pip3 install --upgrade ./whl-file.whl | ||
= Usage = | = Usage = | ||
read_fast5_basecaller.py -i 0 -t 8 -s alb0 -c FLO-MIN106_RAD002_linear.cfg -b | read_fast5_basecaller.py -i 0 -t 8 -s alb0 -c FLO-MIN106_RAD002_linear.cfg -b | ||
Latest revision as of 12:34, 14 November 2018
Introduction
Basecalling software from Oxford Nanopore.
Accessed by loading python/3.6.4
Updating
Get the .whl and run
pip3 install --upgrade ./whl-file.whl
Usage
read_fast5_basecaller.py -i 0 -t 8 -s alb0 -c FLO-MIN106_RAD002_linear.cfg -b
