Augustus

Introduction

Worthy gene prediction program from Mario Stanke at Greifenswald.

Contents

Augustus has many script available, and several executables besides the main "augustus" executable.

It also has a config directory available through the environmental variable $AUGUSTUS_CONFIG_PATH

Usage

protein profiling in blocks

augustus provides --proteinprofile, --predictionStart and --predictionEnd for this, and can be used in the following manner:

augustus --proteinprofile=example/prfl/BUSCO_7.prfl --predictionStart=163394 --predictionEnd=174110 --species=fly "sampleasroo2_.temp"

Admin notes only

Compilation

Is a simple "make" but the Makefiles (especially the ne inside "src") need heavy editing.

filterBam particularly

colamd, got rid of this.