Detonate

Introduction

Quality evaulation of a de-novo transcriptome assembly from the creators of RSEM (Deweylab).

Layout

Two main aspects to this program. Also included here are the executables associated

• rsem-eval
  1. rsem-eval-calculate-score
  2. rsem-eval-estimate-transcript-length-distribution
  • rsem-plot-model
  • rsem-build-read-index
  • rsem-eval-run-em
  • rsem-extract-reference-transcripts
  • rsem-parse-alignments
  • rsem-preref
  • rsem-sam-validator
  • rsem-scan-for-paired-end-reads
  • rsem-simulate-reads

• ref-eval