Introduction

Installation notes

RepeatModeler has a number of dependencies. How these are installed are detailed below:

nseg and nmerge (included in nseg) are quite old programs coded in C by NCBI. These were installed on all machines in /usr/local/bin

The same is done with RECON, which consists of the following executables:

So all these are now available in /usr/local/bin in the nodes as well.

As this also only includes two C-coded executables with quite good names, it is easy enough to install it locally on all the nodes:

and also the following perl scripts (using the unusual *.prl extension) must be also be installed: