GenomeTools

Introduction

Typically use in conjunction with bedtools and bedops.

Includes AnnotationSketch, which is able to render a PNG image from a gff file.

Its commands start with a gt and then a subcommand, such as gff3validator or sketch.

Tools

Repfind

This is a Stefan Kurtz contribution, and can be found in the code under

genometools-1.5.9/src/tools/gt_repfind.c