ChIP-Seq Top2 in Yeast

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Contents

1 Introduction
2 Sample quality
3 Alignment to the S288C Reference
- 3.1 Bam quality
  - 3.1.1 First Experiment
  - 3.1.2 Second Experiment
4 Alignment to the new W303 Reference
- 4.1 Bam quality
  - 4.1.1 First Experiment
  - 4.1.2 Second Experiment

Introduction

This wiki page combines the two sequencing experiments of ChIP-Seq on yeast samples udring June / July 2017.

Sample quality

The MACS2 program takes care of duplicates so samples were only trimmed for adapters and quality.

Alignment to the S288C Reference

Bam quality

First Experiment

Second Experiment

Alignment to the new W303 Reference

Bam quality

First Experiment

Second Experiment

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