User contributions
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- 14:36, 18 June 2017 (diff | hist) . . (+559) . . Research Data Management
- 14:08, 18 June 2017 (diff | hist) . . (+492) . . N Research Data Management (Created page with "= Introduction = The generation of genomic data has been expanding at ever-increasing rates whcih can result in a chaotic flood of datasets unless some discipline of Data Ama...")
- 14:04, 18 June 2017 (diff | hist) . . (+31) . . Main Page
- 15:14, 16 June 2017 (diff | hist) . . (+2,551) . . Thor
- 10:10, 16 June 2017 (diff | hist) . . (+67) . . JBrowse
- 09:53, 16 June 2017 (diff | hist) . . (+110) . . JBrowse
- 09:51, 16 June 2017 (diff | hist) . . (+187) . . JBrowse
- 09:26, 16 June 2017 (diff | hist) . . (+319) . . JBrowse
- 17:08, 15 June 2017 (diff | hist) . . (+534) . . N Bgenie (Created page with "= Introduction = bgen file processor from Jonathan Marchini = Usage = to load up the software: module load bgenie == typical use cases == (See the homepage n the Links...") (current)
- 16:51, 15 June 2017 (diff | hist) . . (+14) . . Main Page
- 14:06, 15 June 2017 (diff | hist) . . (+20) . . Main Page
- 14:05, 15 June 2017 (diff | hist) . . (+4,004) . . N KentUtils (Created page with "= Introduction = A myriad of bioinformatics tools from Jim Kent = The tools = addCols bedGraphToBigWig bigWigCorrelate chainStitchId faCmp...") (current)
- 13:45, 15 June 2017 (diff | hist) . . (0) . . Samtools (current)
- 13:45, 15 June 2017 (diff | hist) . . (+92) . . Samtools
- 12:22, 14 June 2017 (diff | hist) . . (+104) . . Deeptools (current)
- 12:20, 14 June 2017 (diff | hist) . . (+2,865) . . N Deeptools (Created page with "= Introduction = Deeptools is a python processing suite for bamfiles and renders them into genome browser track forms as such as bed and bigwig. It can be invoked in three w...")
- 12:12, 14 June 2017 (diff | hist) . . (+17) . . Main Page
- 15:32, 12 June 2017 (diff | hist) . . (+233) . . Bamtools (current)
- 13:27, 12 June 2017 (diff | hist) . . (-203) . . Bamtools
- 12:07, 12 June 2017 (diff | hist) . . (+8,922) . . N Bamtools (Created page with "= Introduction = The associated tool list is as follows: * convert * count * coverage * filter * header * index * merge * random * revert * sort * split * stats Introductio...")
- 11:59, 12 June 2017 (diff | hist) . . (+16) . . Main Page
- 10:01, 6 June 2017 (diff | hist) . . (+59) . . Thor
- 09:59, 6 June 2017 (diff | hist) . . (+1,660) . . Thor
- 09:21, 6 June 2017 (diff | hist) . . (+94) . . Thor
- 09:18, 6 June 2017 (diff | hist) . . (+2,081) . . Thor
- 16:15, 5 June 2017 (diff | hist) . . (-2,420) . . Macs2
- 16:12, 5 June 2017 (diff | hist) . . (+3,157) . . Macs2
- 16:05, 5 June 2017 (diff | hist) . . (+124) . . Macs2
- 15:54, 5 June 2017 (diff | hist) . . (0) . . Main Page
- 15:53, 5 June 2017 (diff | hist) . . (+43) . . Blat (current)
- 15:52, 5 June 2017 (diff | hist) . . (+768) . . N Blat (Created page with "= Introduction = BLAT is a tool from Jim Kent's stable at UCSD. In purpose it is very close to NCBI's BLAST, but it generally is easier in terms of switches and input options...")
- 15:42, 5 June 2017 (diff | hist) . . (+12) . . Main Page
- 15:23, 5 June 2017 (diff | hist) . . (+306) . . Thor
- 15:19, 5 June 2017 (diff | hist) . . (+462) . . Thor
- 13:33, 5 June 2017 (diff | hist) . . (+2,009) . . N Thor (Created page with "= Introduction = This is one of the newer Differential Peak callers from Costalab in Aachen. = Usage = == a first run == The first few runs are usually error-prone. Thor i...")
- 13:16, 5 June 2017 (diff | hist) . . (+12) . . Main Page
- 12:54, 5 June 2017 (diff | hist) . . (+50) . . m Macs2
- 10:53, 5 June 2017 (diff | hist) . . (+6,446) . . Macs2
- 08:49, 1 June 2017 (diff | hist) . . (0) . . ChIP-Seq Top2 peak-calling
- 15:41, 31 May 2017 (diff | hist) . . (+429) . . ChIP-Seq Top2 peak-calling
- 15:12, 30 May 2017 (diff | hist) . . (+173) . . Bwa (current)
- 14:29, 30 May 2017 (diff | hist) . . (-5) . . ChIP-Seq Top2 peak-calling
- 14:14, 30 May 2017 (diff | hist) . . (+2,521) . . ChIP-Seq Top2 peak-calling
- 13:55, 30 May 2017 (diff | hist) . . (0) . . ChIP-Seq Top2 peak-calling
- 13:54, 30 May 2017 (diff | hist) . . (+1,148) . . ChIP-Seq Top2 peak-calling
- 13:50, 30 May 2017 (diff | hist) . . (+194) . . N ChIP-Seq Top2 peak-calling (Created page with "= Introduction = = Raw data description = = Raw dataset quality analysis = Using FASTQC and them MultiQC. Results linked [http:stab.st-andrews.ac.uk/stab/top2/fastqc.html...")
- 13:29, 30 May 2017 (diff | hist) . . (+33) . . Main Page (→Pipelines)
- 16:49, 22 May 2017 (diff | hist) . . (+3,216) . . N Macs2 (Created page with "= Introduction = One of the main programs used for peak-calling on ChIP-Seq alignments. = Usage = == Help file == Here is the programs help file obtained with the command...")
- 16:45, 22 May 2017 (diff | hist) . . (+13) . . Main Page
- 14:09, 14 May 2017 (diff | hist) . . (+13) . . Quality of Mapping Exercise (current)
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