User contributions
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- 16:15, 18 July 2016 (diff | hist) . . (+581) . . N Miseq Prokaryote FASTQ analysis (Created page with "=Introduction= We have our own Miseq machine and each week a run is carried out (each run costs about £1000 in consumibles) from various samples. They are unloaded onto HDR...")
- 16:09, 18 July 2016 (diff | hist) . . (+38) . . Main Page
- 16:55, 13 July 2016 (diff | hist) . . (+3) . . Srst2
- 17:39, 7 July 2016 (diff | hist) . . (+169) . . SPAdes
- 15:43, 6 July 2016 (diff | hist) . . (+2,538) . . FASTQC and MultiQC
- 15:43, 6 July 2016 (diff | hist) . . (+183) . . FASTQC and MultiQC
- 15:32, 6 July 2016 (diff | hist) . . (+5,010) . . N FASTQC and MultiQC (Created page with "=Introduction= Quality visualization = Help file = SYNOPSIS fastqc seqfile1 seqfile2 .. seqfileN fastqc [-o output dir] [--(no)extract] [-f fastq|bam|sam] [-c...")
- 15:32, 6 July 2016 (diff | hist) . . (+12) . . Main Page
- 14:44, 6 July 2016 (diff | hist) . . (+1) . . FASTQC (current)
- 14:44, 6 July 2016 (diff | hist) . . (+1) . . FASTQC
- 14:43, 6 July 2016 (diff | hist) . . (-7) . . FASTQC
- 14:43, 6 July 2016 (diff | hist) . . (+5,015) . . N FASTQC (Created page with "=Introduction= Quality visualization = Help file = SYNOPSIS fastqc seqfile1 seqfile2 .. seqfileN fastqc [-o output dir] [--(no)extract] [-f fastq|bam|sam]...")
- 14:42, 6 July 2016 (diff | hist) . . (+13) . . Main Page
- 17:17, 5 July 2016 (diff | hist) . . (+317) . . Trimmomatic (current)
- 17:06, 5 July 2016 (diff | hist) . . (+53) . . Trimmomatic
- 17:05, 5 July 2016 (diff | hist) . . (+171) . . Trimmomatic
- 14:54, 5 July 2016 (diff | hist) . . (+550) . . Trimmomatic
- 17:01, 2 July 2016 (diff | hist) . . (-3) . . SPAdes
- 17:01, 2 July 2016 (diff | hist) . . (+126) . . SPAdes
- 15:36, 2 July 2016 (diff | hist) . . (+149) . . SPAdes
- 16:47, 1 July 2016 (diff | hist) . . (+735) . . SPAdes
- 16:16, 1 July 2016 (diff | hist) . . (+613) . . SPAdes
- 13:57, 30 June 2016 (diff | hist) . . (-2) . . Calculating coverage
- 13:53, 30 June 2016 (diff | hist) . . (+40) . . Calculating coverage
- 13:03, 30 June 2016 (diff | hist) . . (+663) . . Calculating coverage
- 16:12, 29 June 2016 (diff | hist) . . (+324) . . N Trimmomatic (Created page with "=Introduction= = Example use-cases= java -jar $PATHTRIMMOJAR/trimmomatic-0.32.jar PE -threads 6 -phred33 $DATASETPATH/Pair1.fastq.gz $DATASETPATH/Pair1.fastq.gz forward_pai...")
- 16:03, 29 June 2016 (diff | hist) . . (+18) . . Main Page
- 15:19, 29 June 2016 (diff | hist) . . (+164) . . 6TB storage expansion
- 15:05, 29 June 2016 (diff | hist) . . (+1,183) . . 6TB storage expansion
- 14:37, 29 June 2016 (diff | hist) . . (+754) . . 6TB storage expansion
- 14:28, 29 June 2016 (diff | hist) . . (+571) . . 6TB storage expansion
- 13:54, 29 June 2016 (diff | hist) . . (+90) . . 6TB storage expansion
- 13:50, 29 June 2016 (diff | hist) . . (+2) . . 6TB storage expansion
- 13:48, 29 June 2016 (diff | hist) . . (+3,259) . . 6TB storage expansion
- 13:42, 29 June 2016 (diff | hist) . . (+87) . . 6TB storage expansion
- 13:38, 29 June 2016 (diff | hist) . . (+7) . . 6TB storage expansion
- 13:38, 29 June 2016 (diff | hist) . . (+1,892) . . 6TB storage expansion
- 11:24, 29 June 2016 (diff | hist) . . (-1) . . 6TB storage expansion
- 11:13, 29 June 2016 (diff | hist) . . (+21) . . Samtools
- 11:06, 29 June 2016 (diff | hist) . . (+84) . . Samtools
- 09:57, 29 June 2016 (diff | hist) . . (+124) . . Samtools
- 09:32, 29 June 2016 (diff | hist) . . (+310) . . Samtools
- 17:31, 28 June 2016 (diff | hist) . . (-4) . . Main Page
- 17:23, 28 June 2016 (diff | hist) . . (-130) . . 6TB storage expansion
- 17:23, 28 June 2016 (diff | hist) . . (+226) . . 6TB storage expansion
- 16:53, 28 June 2016 (diff | hist) . . (+48) . . Calculating coverage
- 16:48, 28 June 2016 (diff | hist) . . (+300) . . N Calculating coverage (Created page with "= Introduction = Coverage can be calculated in several different ways and this pages aims to describe a few of them = Bedtools genomecov = This is one of the most commonly...")
- 16:16, 28 June 2016 (diff | hist) . . (+216) . . Main Page
- 12:42, 28 June 2016 (diff | hist) . . (+18) . . CallSNPs.py
- 13:35, 27 June 2016 (diff | hist) . . (+26) . . Samtools
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