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- 22:16, 2 April 2016 (diff | hist) . . (0) . . CallSNPs.py
- 22:15, 2 April 2016 (diff | hist) . . (+8) . . CallSNPs.py
- 22:07, 2 April 2016 (diff | hist) . . (+14) . . CallSNPs.py
- 21:43, 2 April 2016 (diff | hist) . . (0) . . CallSNPs.py
- 14:50, 2 April 2016 (diff | hist) . . (+6) . . CallSNPs.py
- 14:50, 2 April 2016 (diff | hist) . . (+292) . . CallSNPs.py
- 18:24, 1 April 2016 (diff | hist) . . (+248) . . CallSNPs.py
- 17:50, 1 April 2016 (diff | hist) . . (+326) . . CallSNPs.py
- 17:16, 1 April 2016 (diff | hist) . . (+198) . . CallSNPs.py
- 17:10, 1 April 2016 (diff | hist) . . (+2) . . CallSNPs.py
- 16:53, 1 April 2016 (diff | hist) . . (+25) . . CallSNPs.py
- 16:50, 1 April 2016 (diff | hist) . . (-14) . . CallSNPs.py
- 16:49, 1 April 2016 (diff | hist) . . (-4) . . CallSNPs.py
- 16:48, 1 April 2016 (diff | hist) . . (+2) . . CallSNPs.py
- 16:48, 1 April 2016 (diff | hist) . . (+245) . . CallSNPs.py
- 16:41, 1 April 2016 (diff | hist) . . (+446) . . N CallSNPs.py (Created page with "This script is part of "script_tools" modules. It requires an alignment in the shape of the base reference sequence and the bam files of the short read aligned to that sequen...")
- 16:24, 1 April 2016 (diff | hist) . . (+37) . . Main Page
- 18:36, 31 March 2016 (diff | hist) . . (+157) . . N Bowtie2 (Created page with "= Introduction = = Install notes = * version 2.2.4 and upwards seem to use a new executable style whereby there is a principal bowtie2 executable and then") (current)
- 17:55, 31 March 2016 (diff | hist) . . (+14) . . Main Page
- 17:50, 31 March 2016 (diff | hist) . . (0) . . Srst2
- 17:46, 31 March 2016 (diff | hist) . . (+321) . . N Srst2 (Created page with "=introduction= This python based tool with two main dependencies (samtools and bowtie2) carries out mapping of short reads to detect overall three targets: 1) genes 2) allel...")
- 17:17, 31 March 2016 (diff | hist) . . (+12) . . Main Page
- 18:01, 30 March 2016 (diff | hist) . . (+503) . . BLAST
- 16:34, 30 March 2016 (diff | hist) . . (+458) . . N Velvet (Created page with "This is Daniel Zerbino and Ewan Birney's de-novo genome assembler and is one of the most widely used. It consists of two stages, a hashing stage invoked by the velveth progra...")
- 16:28, 30 March 2016 (diff | hist) . . (+13) . . Main Page
- 16:02, 29 March 2016 (diff | hist) . . (+728) . . N Python (Created page with "The issue with python on Marvin is that the simple "python" executable is not the bioinformatic python version. It's a version just for the system only. Instead, you have to...")
- 16:02, 29 March 2016 (diff | hist) . . (+13) . . Main Page
- 17:55, 24 March 2016 (diff | hist) . . (+356) . . Kallisto
- 19:51, 23 March 2016 (diff | hist) . . (0) . . Kallisto
- 19:50, 23 March 2016 (diff | hist) . . (+314) . . Kallisto
- 18:24, 23 March 2016 (diff | hist) . . (+20) . . Sra-tools
- 18:23, 23 March 2016 (diff | hist) . . (-127) . . Sra-tools
- 18:22, 23 March 2016 (diff | hist) . . (+176) . . Sra-tools
- 18:09, 23 March 2016 (diff | hist) . . (+278) . . N Kallisto (Created page with "It's the new (2015) way of calculating gene expression abundance from NGS short reads It calimms a large increase in speed by avoiding the normal alignment step =Using= ==...")
- 17:56, 23 March 2016 (diff | hist) . . (+7,574) . . Sra-tools
- 17:49, 23 March 2016 (diff | hist) . . (+5) . . Sra-tools
- 17:48, 23 March 2016 (diff | hist) . . (+468) . . N Sra-tools (Created page with "To load module load sra-tools the chief command for thsi tool box is fastq-dump, which downloads the SRA you are looking for Identifying the right SRA name is an issue, so...")
- 17:43, 23 March 2016 (diff | hist) . . (+31) . . Main Page
- 15:20, 8 February 2016 (diff | hist) . . (-2) . . Blast2go: b2g4pipe (→Installation and configuration) (current)
- 15:19, 8 February 2016 (diff | hist) . . (-231) . . Blast2go: b2g4pipe (→databases)
- 15:13, 8 February 2016 (diff | hist) . . (-74) . . Blast2go: b2g4pipe
- 15:11, 8 February 2016 (diff | hist) . . (+1,054) . . Blast2go: b2g4pipe
- 14:58, 8 February 2016 (diff | hist) . . (+442) . . N Blast2go: b2g4pipe (Created page with "Blast2go is the gene ontology annotation program for eukaryotes. Some time after 2012, it became commercialised, although the free usage of early version is still permitted....")
- 14:55, 8 February 2016 (diff | hist) . . (+25) . . Main Page
- 13:45, 8 February 2016 (diff | hist) . . (+206) . . N Diamond (Created page with "This is very fast alternative to the blastx program. This page contains some details about the program == key points made== * Describes blastx as the "gold standard" * high...")
- 12:21, 8 February 2016 (diff | hist) . . (+92) . . Main Page
- 19:22, 5 February 2016 (diff | hist) . . (+1) . . BLAST
- 19:22, 5 February 2016 (diff | hist) . . (+1,394) . . N BLAST (Created page with "This is probably the best known of all bioinformatics applications, and consequently has various different aspects to it. =mpiBLAST= This version which stopped development i...")
- 17:18, 1 February 2016 (diff | hist) . . (0) . . Blast
- 17:17, 1 February 2016 (diff | hist) . . (+221) . . Blast
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