Edgenl2g

From wiki
Revision as of 13:31, 2 October 2016 by Rf (talk | contribs) (Created page with "= Introduction = Essentials of Edinburgh Genomics' Linux for Genomics course == Duration == * 1 day * 2/3's core linux 1/3 genomics focus = Contents = == Core Linux == *...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Introduction

Essentials of Edinburgh Genomics' Linux for Genomics course

Duration

  • 1 day
  • 2/3's core linux 1/3 genomics focus

Contents

Core Linux

  • The shell and commands
  • Getting help
  • Files and directories
  • Navigating the file system
  • File management*
  • Permissions
  • Accessing files
  • Downloading remote files
  • Zipping and unzipping files
  • Pipes and redirects
  • Filtering / manipulating file content
  • Shell scripts
  • Process management

Focused Genomics

Command-line tools for genomics

  • seqtk
  • bioawk
  • samtools
  • bedtools
  • tabix
Retrieved from "http://stab.st-andrews.ac.uk/wiki/index.php?title=Edgenl2g&oldid=684"