GapFiller

Introduction

De-novo assembly improvement software from Baseclear.

This software should be run hand-in-hand with the SSPACE software, and it should be run afterwards.

Usage

As in SSPACE, a configuration file is necessary and is specified by the -l option.

GapFiller.pl -l libraries.txt -s SSPACE_scaffolds.fa -m 30 -o 2 -r 0.7 -n 10 -d 50 -t 10 -T 1 -i 1 -b test