Main Page
Contents
Usage of Cluster
Programs
- BLAST
- blast2go: b2g4pipe
- diamond
- sra-tools
- kallisto
- python
- velvet
- srst2
- bowtie2
- stacks
- pyrad
- cd-hit
- SPAdes
- JBrowse
- PGAP
- ensembl
- MUMmer
- abacas
- prokka
- samtools
- OrthoFinder
- CAFE
- SPAdes
- multiqc
Queue Manager Tips
A cluster is a shared resource with different users running different types of analyses. Nearly all clusters use a piece of software called a queue manager to fairly share out the resource. The queue manager on marvin is called Grid Engine, and it has several commands available, all beginning with q and with qsub being the most commonly used as it submits a command via a jobscript to be processed. Here are some tips:
