Repeatmodeler
Introduction
Installation notes
RepeatModeler has a number of dependencies. How these are installed are detailed below:
nseg
nseg and nmerge (included in nseg) are quite old programs coded in C by NCBI. These were installed on all machines in /usr/local/bin
RECON
The same is done with RECON, which consists of the following executables:
- imagespread
- eledef
- eleredef
- edgeredef
- famdef
So all these are now available in /usr/local/bin in the nodes as well.
RepeatScout
As this also only includes two C-coded executables with quite good names, it is easy enough to install it locally on all the nodes:
- RepeatScout
- build_lmer_table
and also the following must be installed:
- filter-stage-1.prl
- filter-stage-2.prl
- merge-lmer-tables.prl
- compare-out-to-gff.prl
