Blast

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Introduction

The workhorse of bioinformatics, some tips on usgae, and (mostly) how to speed it up

Benchmark Exercises

Transcriptome Panda Blood

  • 92600 transcripts (contigs) in 2.4 million line FASTA file.
  • blastx speed on 62-fragmented nr database: 5% of contigs in 33 hours on blastx
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