Singularity with grid engine

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JW may 2019


Followed guide here: https://blogs.univa.com/2019/01/using-univa-grid-engine-with-singularity/

Pete installed singularity on phylo


now a requestable resource with "-l singularity" to make sure you get a node with singularity on


Example:

qsub -l singularity -b y singularity run ubuntu.sif ./test_script.sh


To add another node with singularity on:


qconf -me <nodename>

On the complex_values line remove NONE if present, and add "singularity=TRUE"