Kallisto

It's the new (2015) way of calculating gene expression abundance from NGS short reads

It calimms a large increase in speed by avoiding the normal alignment step

Using

Links

• Kallisto's own getting started page at starting
• [https://benchtobioinformatics.wordpress.com/2015/07/10/using-kallisto-for-gene-expression-analysis-of-published-rnaseq-data benchtobioinformatics/
• Andrew MacKenzie