Stacks

Dominant Radseq analysis software protocol by Julian Catchen.

Steps

• create database, you must have the appropriate privileges for this. If you do, the command will be something like:

echo "create database <mynewdbname>" | mysql -h <name_of_server_running_mysql> -u <myusername> -p

• ensure $STACKSROOTDIR/share/stacks/sql/my.cnf is set up properly

• ensure modification privileges for the user

• load stack.sql schema onto the database. It's in $STACKSROOTDIR/share/stacks/sql/stacks.sql, i.e.

mysql <mydbname> -h <name_of_server_running_mysql> -u <myusername> -p < $STACKSROOTDIR/share/stacks/sql/stacks.sql