Blast

From wiki
Revision as of 14:46, 1 February 2016 by Rf (talk | contribs)
Jump to: navigation, search

Introduction

The workhorse of bioinformatics, some tips on usage, and (mostly) how to speed it up

Benchmark Exercises

Transcriptome Panda Blood

  • 92600 transcripts (contigs) in 2.4 million line FASTA file.
  • blastx speed on 62-fragmented nr database: 5% of contigs in 33 hours on blastx
Retrieved from "http://stab.st-andrews.ac.uk/wiki/index.php?title=Blast&oldid=14"