Difference between revisions of "Bowtie"
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Revision as of 16:01, 8 November 2016
Introduction
This article refers to the early version of bowtie, which in fact has a few features that version 2 does not have, such as colorspace data processing
Indexing the reference
This is done using the bowtie-build command and the input reference with the second argument being a label for the output files. It is an easy command, no options are required. Here is an example:
bowtie-build NC_002127.fna e_coli_O157_H7
Output files will have the extension ebwt.
