Difference between revisions of "Edgenl2g"
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Revision as of 13:31, 2 October 2016
Introduction
Details of Edinburgh Genomics' Linux for Genomics course
Duration
- 1 day
- 2/3's core linux 1/3 genomics focus
Contents
Core Linux
- The shell and commands
- Getting help
- Files and directories
- Navigating the file system
- File management*
- Permissions
- Accessing files
- Downloading remote files
- Zipping and unzipping files
- Pipes and redirects
- Filtering / manipulating file content
- Shell scripts
- Process management
Focused Genomics
Command-line tools for genomics
- seqtk
- bioawk
- samtools
- bedtools
- tabix
