Difference between revisions of "Archaeopteryx and Forester"
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Revision as of 15:08, 23 September 2016
Introduction
These are two tree handling tools from Christian Zmasek.
Forester usage
If you get major.minor java errors, this is because f the java version. Forester is pretty uptodate, so it will want java version 8.
To convert a newick tree to phyloxml:
java -cp /usr/local/forester_1043.jar org.forester.application.phyloxml_converter -f=dummy gubbins.final_tree.tre gubbins.final_tree.xml
