Difference between revisions of "Srst2"
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Revision as of 16:50, 31 March 2016
Introduction
This python based tool with two main dependencies (samtools and bowtie2) carries out mapping of short reads to detect overall three targets: 1) genes 2) alleles and 3) multi-locus sequence types (MLST) from WGS data (which we can take to be the short reads).
Glossary
- MLST: MultiLocus Sequence Type
